Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01835 and PS417_01840 overlap by 4 nucleotides PS417_01840 and PS417_01845 are separated by 10 nucleotides PS417_01845 and PS417_01850 are separated by 26 nucleotides PS417_01850 and PS417_01855 are separated by 3 nucleotides PS417_01855 and PS417_01860 are separated by 41 nucleotides
PS417_01835: PS417_01835 - twin-arginine protein translocation system subunit TatC, at 410,513 to 411,301
_01835
PS417_01840: PS417_01840 - preprotein translocase, at 411,298 to 411,702
_01840
PS417_01845: PS417_01845 - preprotein translocase subunit SecA, at 411,713 to 411,991
_01845
PS417_01850: PS417_01850 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 412,018 to 412,350
_01850
PS417_01855: PS417_01855 - phosphoribosyl-AMP cyclohydrolase, at 412,354 to 412,746
_01855
PS417_01860: PS417_01860 - ubiquinone biosynthesis protein UbiB, at 412,788 to 414,392
_01860
Position (kb) 412
413 Strain fitness (log2 ratio) -2
-1
0
1 at 411.322 kb on - strand at 411.767 kb on - strand, within PS417_01845 at 412.141 kb on + strand, within PS417_01850 at 412.142 kb on - strand, within PS417_01850 at 412.142 kb on - strand, within PS417_01850 at 412.280 kb on + strand, within PS417_01850 at 412.280 kb on + strand, within PS417_01850 at 412.281 kb on - strand, within PS417_01850 at 412.355 kb on + strand at 412.355 kb on + strand at 412.355 kb on + strand at 412.356 kb on - strand at 412.437 kb on - strand at 412.598 kb on + strand, within PS417_01855 at 412.679 kb on + strand, within PS417_01855 at 412.680 kb on - strand, within PS417_01855 at 412.774 kb on + strand at 412.774 kb on + strand at 412.774 kb on + strand at 412.774 kb on + strand at 412.774 kb on + strand at 412.774 kb on + strand at 412.775 kb on - strand at 412.775 kb on - strand at 412.775 kb on - strand at 412.775 kb on - strand at 412.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 411,322 - -2.1 411,767 - PS417_01845 0.19 +0.0 412,141 + PS417_01850 0.37 -1.1 412,142 - PS417_01850 0.37 +0.8 412,142 - PS417_01850 0.37 +0.2 412,280 + PS417_01850 0.79 -0.8 412,280 + PS417_01850 0.79 -0.9 412,281 - PS417_01850 0.79 -2.0 412,355 + -1.1 412,355 + -1.3 412,355 + -1.1 412,356 - -0.3 412,437 - +0.5 412,598 + PS417_01855 0.62 -0.5 412,679 + PS417_01855 0.83 +0.3 412,680 - PS417_01855 0.83 -0.5 412,774 + +0.4 412,774 + -0.3 412,774 + +0.4 412,774 + -2.5 412,774 + -1.5 412,774 + -0.3 412,775 - -0.8 412,775 - -0.8 412,775 - -0.1 412,775 - -1.6 412,775 - -0.4
Or see this region's nucleotide sequence