Strain Fitness in Pseudomonas simiae WCS417 around PS417_18370

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18360 and PS417_18365 are separated by 144 nucleotidesPS417_18365 and PS417_18370 are separated by 170 nucleotidesPS417_18370 and PS417_18375 are separated by 33 nucleotides PS417_18360: PS417_18360 - hypothetical protein, at 3,999,530 to 3,999,847 _18360 PS417_18365: PS417_18365 - hypothetical protein, at 3,999,992 to 4,000,300 _18365 PS417_18370: PS417_18370 - hypothetical protein, at 4,000,471 to 4,000,683 _18370 PS417_18375: PS417_18375 - hypothetical protein, at 4,000,717 to 4,001,745 _18375 Position (kb) 4000 4001Strain fitness (log2 ratio) -2 -1 0 1 2at 3999.562 kb on + strand, within PS417_18360at 3999.597 kb on + strand, within PS417_18360at 3999.598 kb on - strand, within PS417_18360at 3999.614 kb on - strand, within PS417_18360at 3999.857 kb on + strandat 3999.857 kb on + strandat 3999.857 kb on + strandat 3999.857 kb on + strandat 3999.858 kb on - strandat 3999.916 kb on + strandat 3999.917 kb on - strandat 3999.981 kb on + strandat 3999.981 kb on + strandat 3999.982 kb on - strandat 4000.090 kb on + strand, within PS417_18365at 4000.090 kb on + strand, within PS417_18365at 4000.090 kb on + strand, within PS417_18365at 4000.090 kb on + strand, within PS417_18365at 4000.090 kb on + strand, within PS417_18365at 4000.090 kb on + strand, within PS417_18365at 4000.091 kb on - strand, within PS417_18365at 4000.091 kb on - strand, within PS417_18365at 4000.091 kb on - strandat 4000.094 kb on + strandat 4000.095 kb on - strand, within PS417_18365at 4000.095 kb on - strand, within PS417_18365at 4000.095 kb on - strand, within PS417_18365at 4000.095 kb on - strand, within PS417_18365at 4000.095 kb on - strand, within PS417_18365at 4000.099 kb on - strand, within PS417_18365at 4000.160 kb on + strand, within PS417_18365at 4000.180 kb on + strand, within PS417_18365at 4000.181 kb on - strand, within PS417_18365at 4000.182 kb on + strand, within PS417_18365at 4000.182 kb on + strand, within PS417_18365at 4000.183 kb on - strand, within PS417_18365at 4000.217 kb on - strand, within PS417_18365at 4000.373 kb on + strandat 4000.374 kb on - strandat 4000.374 kb on - strandat 4000.377 kb on + strandat 4000.378 kb on - strandat 4000.378 kb on - strandat 4000.531 kb on + strand, within PS417_18370at 4000.532 kb on - strand, within PS417_18370at 4000.629 kb on - strand, within PS417_18370at 4000.681 kb on + strandat 4000.681 kb on + strandat 4000.861 kb on - strand, within PS417_18375at 4000.872 kb on + strand, within PS417_18375at 4000.982 kb on + strand, within PS417_18375at 4000.983 kb on - strand, within PS417_18375at 4000.983 kb on - strand, within PS417_18375at 4001.066 kb on - strand, within PS417_18375at 4001.093 kb on + strandat 4001.094 kb on - strand, within PS417_18375at 4001.094 kb on - strand, within PS417_18375at 4001.094 kb on - strand, within PS417_18375at 4001.298 kb on + strand, within PS417_18375at 4001.299 kb on - strand, within PS417_18375at 4001.398 kb on - strand, within PS417_18375at 4001.427 kb on - strand, within PS417_18375at 4001.466 kb on - strand, within PS417_18375

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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3,999,562 + PS417_18360 0.10 -0.4
3,999,597 + PS417_18360 0.21 -0.5
3,999,598 - PS417_18360 0.21 -0.0
3,999,614 - PS417_18360 0.26 +0.6
3,999,857 + -0.2
3,999,857 + +0.9
3,999,857 + +0.3
3,999,857 + -0.2
3,999,858 - -0.0
3,999,916 + +0.0
3,999,917 - -0.1
3,999,981 + -0.2
3,999,981 + -0.6
3,999,982 - -0.9
4,000,090 + PS417_18365 0.32 -0.2
4,000,090 + PS417_18365 0.32 -0.8
4,000,090 + PS417_18365 0.32 +0.8
4,000,090 + PS417_18365 0.32 +0.3
4,000,090 + PS417_18365 0.32 -0.9
4,000,090 + PS417_18365 0.32 -0.4
4,000,091 - PS417_18365 0.32 -0.4
4,000,091 - PS417_18365 0.32 -0.1
4,000,091 - -0.7
4,000,094 + -1.9
4,000,095 - PS417_18365 0.33 -0.4
4,000,095 - PS417_18365 0.33 -0.0
4,000,095 - PS417_18365 0.33 +1.4
4,000,095 - PS417_18365 0.33 -0.1
4,000,095 - PS417_18365 0.33 +0.4
4,000,099 - PS417_18365 0.35 +0.7
4,000,160 + PS417_18365 0.54 +0.4
4,000,180 + PS417_18365 0.61 -0.7
4,000,181 - PS417_18365 0.61 -0.9
4,000,182 + PS417_18365 0.61 -0.1
4,000,182 + PS417_18365 0.61 -0.4
4,000,183 - PS417_18365 0.62 +0.0
4,000,217 - PS417_18365 0.73 -0.4
4,000,373 + -0.5
4,000,374 - -0.3
4,000,374 - -0.4
4,000,377 + -0.0
4,000,378 - -0.1
4,000,378 - -0.5
4,000,531 + PS417_18370 0.28 -0.6
4,000,532 - PS417_18370 0.29 -0.0
4,000,629 - PS417_18370 0.74 -1.0
4,000,681 + +0.4
4,000,681 + +0.7
4,000,861 - PS417_18375 0.14 +0.1
4,000,872 + PS417_18375 0.15 -0.8
4,000,982 + PS417_18375 0.26 +0.2
4,000,983 - PS417_18375 0.26 +0.4
4,000,983 - PS417_18375 0.26 +0.7
4,001,066 - PS417_18375 0.34 -0.3
4,001,093 + +2.0
4,001,094 - PS417_18375 0.37 -2.4
4,001,094 - PS417_18375 0.37 -0.7
4,001,094 - PS417_18375 0.37 -0.3
4,001,298 + PS417_18375 0.56 +0.3
4,001,299 - PS417_18375 0.57 -0.8
4,001,398 - PS417_18375 0.66 +0.6
4,001,427 - PS417_18375 0.69 -0.5
4,001,466 - PS417_18375 0.73 -0.1

Or see this region's nucleotide sequence