Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01780 and PS417_01785 overlap by 4 nucleotides PS417_01785 and PS417_01790 are separated by 266 nucleotides PS417_01790 and PS417_01795 overlap by 8 nucleotides
PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845
_01780
PS417_01785: PS417_01785 - D-tyrosyl-tRNA(Tyr) deacylase, at 396,842 to 397,279
_01785
PS417_01790: PS417_01790 - glucan biosynthesis protein G, at 397,546 to 399,282
_01790
PS417_01795: PS417_01795 - glucosyltransferase MdoH, at 399,275 to 401,845
_01795
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.668 kb on + strand, within PS417_01780 at 396.669 kb on - strand, within PS417_01780 at 396.979 kb on - strand, within PS417_01785 at 396.995 kb on + strand, within PS417_01785 at 397.174 kb on - strand at 397.299 kb on + strand at 397.332 kb on - strand at 397.368 kb on + strand at 397.372 kb on + strand at 397.372 kb on + strand at 397.417 kb on + strand at 397.421 kb on + strand at 397.422 kb on - strand at 397.495 kb on + strand at 397.495 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.502 kb on - strand at 397.554 kb on + strand at 397.708 kb on + strand at 397.766 kb on - strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.913 kb on - strand, within PS417_01790 at 398.087 kb on - strand, within PS417_01790 at 398.350 kb on + strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.389 kb on + strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.869 kb on + strand, within PS417_01790 at 398.870 kb on - strand, within PS417_01790 at 399.259 kb on + strand at 399.259 kb on + strand at 399.259 kb on + strand at 399.280 kb on + strand at 399.281 kb on - strand at 399.315 kb on - strand at 399.328 kb on - strand at 399.657 kb on + strand, within PS417_01795 at 399.658 kb on - strand, within PS417_01795 at 399.749 kb on + strand, within PS417_01795 at 399.750 kb on - strand, within PS417_01795 at 399.840 kb on + strand, within PS417_01795 at 399.958 kb on + strand, within PS417_01795 at 399.958 kb on + strand, within PS417_01795 at 399.959 kb on - strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.227 kb on - strand, within PS417_01795
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 396,570 + PS417_01780 0.72 +1.5 396,570 + PS417_01780 0.72 -0.2 396,570 + PS417_01780 0.72 -0.6 396,668 + PS417_01780 0.82 -0.7 396,669 - PS417_01780 0.82 -0.8 396,979 - PS417_01785 0.31 +0.1 396,995 + PS417_01785 0.35 -0.1 397,174 - +2.5 397,299 + -0.4 397,332 - -1.4 397,368 + -1.5 397,372 + +0.5 397,372 + -0.3 397,417 + -0.2 397,421 + -1.1 397,422 - -0.9 397,495 + -1.8 397,495 + +0.6 397,497 + -0.8 397,497 + -0.8 397,497 + +0.1 397,497 + -0.1 397,497 + +0.2 397,497 + -1.8 397,497 + +0.7 397,497 + -0.1 397,497 + -1.5 397,497 + -0.2 397,497 + +0.7 397,497 + -1.0 397,497 + -0.7 397,498 - -2.1 397,498 - -1.9 397,498 - -1.5 397,498 - -2.6 397,498 - -0.8 397,498 - -1.7 397,498 - -1.9 397,498 - -3.9 397,498 - -2.2 397,498 - -1.4 397,498 - -1.0 397,498 - -1.5 397,498 - -1.9 397,498 - -2.6 397,498 - -2.2 397,498 - -1.0 397,502 - -3.8 397,554 + -2.2 397,708 + -0.9 397,766 - PS417_01790 0.13 -1.7 397,912 + PS417_01790 0.21 -1.9 397,912 + PS417_01790 0.21 -2.3 397,913 - PS417_01790 0.21 -1.8 398,087 - PS417_01790 0.31 -2.8 398,350 + PS417_01790 0.46 +0.1 398,351 - PS417_01790 0.46 -2.5 398,351 - PS417_01790 0.46 -2.0 398,351 - PS417_01790 0.46 +0.8 398,389 + PS417_01790 0.49 -1.5 398,576 - PS417_01790 0.59 -1.1 398,576 - PS417_01790 0.59 -2.9 398,576 - PS417_01790 0.59 -0.5 398,869 + PS417_01790 0.76 -2.1 398,870 - PS417_01790 0.76 -0.6 399,259 + -1.8 399,259 + -3.3 399,259 + -0.8 399,280 + -2.3 399,281 - -1.1 399,315 - -0.5 399,328 - -1.8 399,657 + PS417_01795 0.15 -2.0 399,658 - PS417_01795 0.15 -2.0 399,749 + PS417_01795 0.18 -3.5 399,750 - PS417_01795 0.18 -1.7 399,840 + PS417_01795 0.22 -2.9 399,958 + PS417_01795 0.27 -1.6 399,958 + PS417_01795 0.27 -2.7 399,959 - PS417_01795 0.27 -1.4 400,144 + PS417_01795 0.34 -3.5 400,144 + PS417_01795 0.34 -2.6 400,144 + PS417_01795 0.34 -2.2 400,227 - PS417_01795 0.37 -2.2
Or see this region's nucleotide sequence