Strain Fitness in Pseudomonas simiae WCS417 around PS417_15370
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X |
|---|---|---|---|---|---|
| remove | |||||
| 3,371,056 | + | -0.1 | |||
| 3,371,096 | + | -0.1 | |||
| 3,371,152 | - | +0.5 | |||
| 3,371,152 | - | +0.1 | |||
| 3,371,155 | + | -0.2 | |||
| 3,371,156 | - | -0.2 | |||
| 3,371,156 | - | +1.8 | |||
| 3,371,661 | - | PS417_15365 | 0.64 | -0.4 | |
| 3,372,026 | + | -0.4 | |||
| 3,372,104 | - | PS417_15370 | 0.14 | -0.7 | |
| 3,372,427 | + | PS417_15370 | 0.70 | -0.5 | |
| 3,372,427 | + | PS417_15370 | 0.70 | -0.1 | |
| 3,372,427 | + | PS417_15370 | 0.70 | +0.2 | |
| 3,372,558 | + | -0.2 | |||
| 3,372,559 | - | -1.0 | |||
| 3,372,574 | - | -0.4 | |||
| 3,372,613 | - | +0.6 | |||
| 3,372,813 | + | PS417_15375 | 0.19 | -3.0 | |
| 3,372,813 | + | PS417_15375 | 0.19 | -0.3 | |
| 3,372,814 | - | PS417_15375 | 0.19 | +0.4 | |
| 3,372,954 | - | PS417_15375 | 0.28 | -0.8 | |
| 3,372,978 | + | PS417_15375 | 0.29 | -0.4 |
Or see this region's nucleotide sequence