Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01050 and PS417_01055 are separated by 118 nucleotides PS417_01055 and PS417_01060 are separated by 423 nucleotides
PS417_01050: PS417_01050 - ACR family transporter, at 228,326 to 231,391
_01050
PS417_01055: PS417_01055 - methyltransferase, at 231,510 to 232,136
_01055
PS417_01060: PS417_01060 - ABC transporter permease, at 232,560 to 233,204
_01060
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1 at 230.557 kb on + strand, within PS417_01050 at 230.619 kb on + strand, within PS417_01050 at 230.774 kb on - strand, within PS417_01050 at 230.837 kb on + strand, within PS417_01050 at 231.128 kb on + strand at 231.143 kb on + strand at 231.145 kb on + strand at 231.146 kb on - strand at 231.270 kb on - strand at 231.333 kb on - strand at 231.345 kb on - strand at 231.436 kb on + strand at 231.437 kb on - strand at 231.437 kb on - strand at 231.437 kb on - strand at 231.438 kb on + strand at 231.438 kb on + strand at 231.438 kb on + strand at 231.438 kb on + strand at 231.439 kb on - strand at 231.439 kb on - strand at 231.439 kb on - strand at 231.439 kb on - strand at 231.511 kb on + strand at 231.519 kb on - strand at 231.574 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.578 kb on - strand, within PS417_01055 at 231.578 kb on - strand, within PS417_01055 at 231.992 kb on + strand, within PS417_01055 at 232.082 kb on - strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.168 kb on + strand at 232.168 kb on + strand at 232.168 kb on + strand at 232.169 kb on - strand at 232.244 kb on - strand at 232.284 kb on + strand at 232.284 kb on + strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.302 kb on + strand at 232.313 kb on + strand at 232.313 kb on + strand at 232.314 kb on - strand at 232.314 kb on - strand at 232.315 kb on + strand at 232.315 kb on + strand at 232.316 kb on - strand at 232.316 kb on - strand at 232.321 kb on + strand at 232.321 kb on + strand at 232.349 kb on + strand at 232.349 kb on + strand at 232.350 kb on - strand at 232.350 kb on - strand at 232.557 kb on + strand at 232.558 kb on - strand at 232.558 kb on - strand at 232.955 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 230,557 + PS417_01050 0.73 +0.5 230,619 + PS417_01050 0.75 -0.4 230,774 - PS417_01050 0.80 +0.1 230,837 + PS417_01050 0.82 -0.3 231,128 + -0.6 231,143 + -0.0 231,145 + -0.1 231,146 - +0.3 231,270 - -1.3 231,333 - -0.4 231,345 - -0.5 231,436 + +1.1 231,437 - +0.1 231,437 - +1.0 231,437 - -0.7 231,438 + +0.4 231,438 + -0.0 231,438 + -0.0 231,438 + +1.5 231,439 - +0.3 231,439 - +0.4 231,439 - -0.7 231,439 - -0.2 231,511 + +0.1 231,519 - +0.5 231,574 + PS417_01055 0.10 -0.0 231,577 + PS417_01055 0.11 -0.1 231,577 + PS417_01055 0.11 +0.3 231,577 + PS417_01055 0.11 +0.2 231,578 - PS417_01055 0.11 +0.2 231,578 - PS417_01055 0.11 +0.8 231,992 + PS417_01055 0.77 +0.7 232,082 - -1.8 232,166 + -0.1 232,166 + +0.0 232,166 + +0.3 232,166 + -0.1 232,167 - -0.1 232,167 - -0.9 232,167 - -0.1 232,167 - -0.5 232,167 - -0.2 232,168 + -2.4 232,168 + +0.2 232,168 + +0.1 232,169 - -0.0 232,244 - +1.0 232,284 + +0.3 232,284 + -0.6 232,285 - +0.4 232,285 - -0.2 232,285 - +0.1 232,302 + +0.5 232,313 + -1.1 232,313 + +0.6 232,314 - -0.1 232,314 - -0.1 232,315 + -0.4 232,315 + -0.2 232,316 - -0.2 232,316 - -1.2 232,321 + -0.4 232,321 + -0.1 232,349 + +0.7 232,349 + -1.0 232,350 - +0.1 232,350 - -0.0 232,557 + -1.7 232,558 - -0.2 232,558 - +1.1 232,955 - PS417_01060 0.61 -0.1 233,075 - PS417_01060 0.80 -0.1 233,075 - PS417_01060 0.80 -1.5 233,075 - PS417_01060 0.80 -0.2 233,075 - PS417_01060 0.80 +0.2 233,078 + PS417_01060 0.80 +0.3 233,078 + PS417_01060 0.80 +0.3 233,078 + PS417_01060 0.80 -0.1 233,079 - PS417_01060 0.80 -0.6 233,079 - PS417_01060 0.80 -0.2
Or see this region's nucleotide sequence