Strain Fitness in Pseudomonas simiae WCS417 around PS417_00660

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00655 and PS417_00660 are separated by 15 nucleotidesPS417_00660 and PS417_00665 overlap by 4 nucleotides PS417_00655: PS417_00655 - DSBA oxidoreductase, at 133,695 to 135,230 _00655 PS417_00660: PS417_00660 - DSBA oxidoreductase, at 135,246 to 136,304 _00660 PS417_00665: PS417_00665 - RND transporter, at 136,301 to 137,746 _00665 Position (kb) 135 136 137Strain fitness (log2 ratio) -1 0 1at 134.847 kb on + strand, within PS417_00655at 134.847 kb on + strand, within PS417_00655at 134.999 kb on + strand, within PS417_00655at 135.141 kb on + strandat 135.142 kb on - strandat 135.144 kb on + strandat 135.144 kb on + strandat 135.145 kb on - strandat 135.309 kb on + strandat 135.310 kb on - strandat 135.310 kb on - strandat 135.518 kb on + strand, within PS417_00660at 135.870 kb on + strand, within PS417_00660at 135.871 kb on - strand, within PS417_00660at 135.933 kb on + strand, within PS417_00660at 135.933 kb on + strand, within PS417_00660at 135.984 kb on + strand, within PS417_00660at 135.985 kb on - strand, within PS417_00660at 136.023 kb on - strand, within PS417_00660at 136.292 kb on - strandat 136.502 kb on - strand, within PS417_00665at 136.502 kb on - strand, within PS417_00665at 136.625 kb on + strand, within PS417_00665at 136.626 kb on - strand, within PS417_00665at 136.848 kb on - strand, within PS417_00665at 136.867 kb on - strand, within PS417_00665at 136.867 kb on - strand, within PS417_00665at 137.000 kb on - strand, within PS417_00665

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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134,847 + PS417_00655 0.75 -0.7
134,847 + PS417_00655 0.75 -0.1
134,999 + PS417_00655 0.85 -1.4
135,141 + +1.5
135,142 - +0.6
135,144 + -0.4
135,144 + -0.7
135,145 - -0.1
135,309 + +0.1
135,310 - -0.4
135,310 - +1.5
135,518 + PS417_00660 0.26 -1.3
135,870 + PS417_00660 0.59 -1.0
135,871 - PS417_00660 0.59 -0.8
135,933 + PS417_00660 0.65 -0.1
135,933 + PS417_00660 0.65 +0.5
135,984 + PS417_00660 0.70 -0.8
135,985 - PS417_00660 0.70 -0.5
136,023 - PS417_00660 0.73 -0.4
136,292 - -0.4
136,502 - PS417_00665 0.14 -0.5
136,502 - PS417_00665 0.14 -1.1
136,625 + PS417_00665 0.22 +0.2
136,626 - PS417_00665 0.22 -0.4
136,848 - PS417_00665 0.38 -0.1
136,867 - PS417_00665 0.39 +0.7
136,867 - PS417_00665 0.39 +0.4
137,000 - PS417_00665 0.48 -1.1

Or see this region's nucleotide sequence