Strain Fitness in Pseudomonas simiae WCS417 around PS417_20045

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20040 and PS417_20045 overlap by 4 nucleotidesPS417_20045 and PS417_20050 overlap by 8 nucleotidesPS417_20050 and PS417_20055 overlap by 4 nucleotides PS417_20040: PS417_20040 - cobyric acid synthase, at 4,348,987 to 4,350,438 _20040 PS417_20045: PS417_20045 - threonine-phosphate decarboxylase, at 4,350,435 to 4,351,424 _20045 PS417_20050: PS417_20050 - cobalamin biosynthesis protein CobD, at 4,351,417 to 4,352,325 _20050 PS417_20055: PS417_20055 - cob(II)yrinic acid a,c-diamide reductase, at 4,352,322 to 4,352,972 _20055 Position (kb) 4350 4351 4352Strain fitness (log2 ratio) -3 -2 -1 0 1at 4349.526 kb on - strand, within PS417_20040at 4349.526 kb on - strand, within PS417_20040at 4349.542 kb on + strand, within PS417_20040at 4349.766 kb on - strand, within PS417_20040at 4349.863 kb on - strand, within PS417_20040at 4350.066 kb on - strand, within PS417_20040at 4350.440 kb on + strandat 4350.441 kb on - strandat 4350.441 kb on - strandat 4350.449 kb on + strandat 4350.726 kb on + strand, within PS417_20045at 4350.726 kb on + strand, within PS417_20045at 4350.726 kb on + strand, within PS417_20045at 4350.726 kb on + strand, within PS417_20045at 4350.726 kb on + strand, within PS417_20045at 4350.727 kb on - strand, within PS417_20045at 4350.727 kb on - strand, within PS417_20045at 4350.727 kb on - strand, within PS417_20045at 4350.940 kb on - strand, within PS417_20045at 4351.044 kb on + strand, within PS417_20045at 4351.139 kb on - strand, within PS417_20045at 4351.241 kb on - strand, within PS417_20045at 4351.243 kb on + strand, within PS417_20045at 4351.424 kb on + strandat 4351.425 kb on - strandat 4351.562 kb on + strand, within PS417_20050at 4351.562 kb on + strand, within PS417_20050at 4351.562 kb on + strand, within PS417_20050at 4351.562 kb on + strand, within PS417_20050at 4351.562 kb on + strand, within PS417_20050at 4351.563 kb on - strand, within PS417_20050at 4351.563 kb on - strand, within PS417_20050at 4351.563 kb on - strand, within PS417_20050at 4351.700 kb on + strand, within PS417_20050at 4351.701 kb on - strand, within PS417_20050at 4351.701 kb on - strand, within PS417_20050at 4351.730 kb on + strand, within PS417_20050at 4351.822 kb on + strand, within PS417_20050at 4351.966 kb on + strand, within PS417_20050at 4351.966 kb on + strand, within PS417_20050at 4351.966 kb on + strand, within PS417_20050at 4351.974 kb on - strand, within PS417_20050at 4352.073 kb on - strand, within PS417_20050at 4352.106 kb on - strand, within PS417_20050at 4352.106 kb on - strand, within PS417_20050at 4352.350 kb on + strandat 4352.413 kb on + strand, within PS417_20055

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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4,349,526 - PS417_20040 0.37 +0.3
4,349,526 - PS417_20040 0.37 +0.8
4,349,542 + PS417_20040 0.38 -0.7
4,349,766 - PS417_20040 0.54 -0.3
4,349,863 - PS417_20040 0.60 -0.1
4,350,066 - PS417_20040 0.74 -2.8
4,350,440 + +0.4
4,350,441 - +0.3
4,350,441 - +0.7
4,350,449 + -0.7
4,350,726 + PS417_20045 0.29 -0.3
4,350,726 + PS417_20045 0.29 -0.3
4,350,726 + PS417_20045 0.29 -0.3
4,350,726 + PS417_20045 0.29 -0.9
4,350,726 + PS417_20045 0.29 -0.8
4,350,727 - PS417_20045 0.29 -0.7
4,350,727 - PS417_20045 0.29 +0.3
4,350,727 - PS417_20045 0.29 -0.5
4,350,940 - PS417_20045 0.51 -1.6
4,351,044 + PS417_20045 0.62 -0.3
4,351,139 - PS417_20045 0.71 -1.1
4,351,241 - PS417_20045 0.81 -1.5
4,351,243 + PS417_20045 0.82 -0.3
4,351,424 + -0.7
4,351,425 - +0.1
4,351,562 + PS417_20050 0.16 -0.8
4,351,562 + PS417_20050 0.16 -0.2
4,351,562 + PS417_20050 0.16 -0.2
4,351,562 + PS417_20050 0.16 +0.1
4,351,562 + PS417_20050 0.16 -0.3
4,351,563 - PS417_20050 0.16 -0.2
4,351,563 - PS417_20050 0.16 -0.2
4,351,563 - PS417_20050 0.16 -2.4
4,351,700 + PS417_20050 0.31 -0.2
4,351,701 - PS417_20050 0.31 -0.3
4,351,701 - PS417_20050 0.31 -0.4
4,351,730 + PS417_20050 0.34 -2.1
4,351,822 + PS417_20050 0.45 -0.8
4,351,966 + PS417_20050 0.60 -0.0
4,351,966 + PS417_20050 0.60 -0.6
4,351,966 + PS417_20050 0.60 -0.2
4,351,974 - PS417_20050 0.61 -0.0
4,352,073 - PS417_20050 0.72 -0.2
4,352,106 - PS417_20050 0.76 -0.4
4,352,106 - PS417_20050 0.76 +0.0
4,352,350 + -0.1
4,352,413 + PS417_20055 0.14 -0.9

Or see this region's nucleotide sequence