Strain Fitness in Pseudomonas simiae WCS417 around PS417_19460

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19455 and PS417_19460 are separated by 119 nucleotidesPS417_19460 and PS417_19465 are separated by 166 nucleotidesPS417_19465 and PS417_19470 are separated by 3 nucleotides PS417_19455: PS417_19455 - lipid A biosynthesis lauroyl acyltransferase, at 4,219,059 to 4,219,994 _19455 PS417_19460: PS417_19460 - septum formation inhibitor, at 4,220,114 to 4,220,851 _19460 PS417_19465: PS417_19465 - cell division inhibitor MinD, at 4,221,018 to 4,221,830 _19465 PS417_19470: PS417_19470 - cell division topological specificity factor, at 4,221,834 to 4,222,088 _19470 Position (kb) 4220 4221Strain fitness (log2 ratio) -1 0 1at 4220.029 kb on + strandat 4220.029 kb on + strandat 4220.073 kb on + strandat 4220.073 kb on + strandat 4220.073 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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4,220,029 + -1.2
4,220,029 + -0.5
4,220,073 + -0.4
4,220,073 + +0.1
4,220,073 + -0.0

Or see this region's nucleotide sequence