Strain Fitness in Pseudomonas simiae WCS417 around PS417_19455
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X |
---|---|---|---|---|---|
remove | |||||
4,218,242 | + | PS417_19450 | 0.31 | -0.9 | |
4,218,242 | + | PS417_19450 | 0.31 | -0.9 | |
4,218,242 | + | PS417_19450 | 0.31 | -0.2 | |
4,218,243 | - | PS417_19450 | 0.31 | -0.7 | |
4,218,284 | - | PS417_19450 | 0.34 | -0.5 | |
4,218,284 | - | PS417_19450 | 0.34 | +0.7 | |
4,218,284 | - | PS417_19450 | 0.34 | +0.1 | |
4,218,825 | + | PS417_19450 | 0.82 | -0.2 | |
4,218,825 | + | PS417_19450 | 0.82 | +0.2 | |
4,218,825 | + | PS417_19450 | 0.82 | -0.9 | |
4,220,029 | + | -1.2 | |||
4,220,029 | + | -0.5 | |||
4,220,073 | + | -0.4 | |||
4,220,073 | + | +0.1 | |||
4,220,073 | + | -0.0 |
Or see this region's nucleotide sequence