Strain Fitness in Pseudomonas simiae WCS417 around PS417_05260

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05255 and PS417_05260 are separated by 140 nucleotidesPS417_05260 and PS417_05265 are separated by 10 nucleotidesPS417_05265 and PS417_05270 are separated by 42 nucleotides PS417_05255: PS417_05255 - hypothetical protein, at 1,166,199 to 1,167,077 _05255 PS417_05260: PS417_05260 - MFS transporter, at 1,167,218 to 1,168,558 _05260 PS417_05265: PS417_05265 - short-chain dehydrogenase, at 1,168,569 to 1,169,330 _05265 PS417_05270: PS417_05270 - 3-oxoacyl-ACP reductase, at 1,169,373 to 1,170,122 _05270 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1166.516 kb on + strand, within PS417_05255at 1166.566 kb on - strand, within PS417_05255at 1166.632 kb on - strand, within PS417_05255at 1166.667 kb on + strand, within PS417_05255at 1166.668 kb on - strand, within PS417_05255at 1166.670 kb on + strand, within PS417_05255at 1166.670 kb on + strand, within PS417_05255at 1166.670 kb on + strand, within PS417_05255at 1166.671 kb on - strand, within PS417_05255at 1166.707 kb on - strand, within PS417_05255at 1167.228 kb on - strandat 1167.330 kb on - strandat 1167.330 kb on - strandat 1167.330 kb on - strandat 1167.494 kb on - strand, within PS417_05260at 1167.494 kb on - strand, within PS417_05260at 1167.494 kb on - strand, within PS417_05260at 1167.627 kb on - strand, within PS417_05260at 1167.627 kb on - strand, within PS417_05260at 1167.641 kb on + strand, within PS417_05260at 1167.642 kb on - strand, within PS417_05260at 1167.642 kb on - strand, within PS417_05260at 1167.642 kb on - strand, within PS417_05260at 1167.685 kb on + strand, within PS417_05260at 1167.689 kb on + strand, within PS417_05260at 1167.689 kb on + strandat 1167.690 kb on - strand, within PS417_05260at 1167.690 kb on - strand, within PS417_05260at 1167.691 kb on + strand, within PS417_05260at 1167.697 kb on - strand, within PS417_05260at 1167.927 kb on - strand, within PS417_05260at 1168.090 kb on + strand, within PS417_05260at 1168.091 kb on - strand, within PS417_05260at 1168.261 kb on + strand, within PS417_05260at 1168.283 kb on + strand, within PS417_05260at 1168.284 kb on - strand, within PS417_05260at 1168.284 kb on - strand, within PS417_05260at 1168.336 kb on + strand, within PS417_05260at 1168.336 kb on + strand, within PS417_05260at 1168.557 kb on - strandat 1168.636 kb on - strandat 1168.668 kb on + strand, within PS417_05265at 1168.672 kb on - strand, within PS417_05265at 1169.001 kb on + strand, within PS417_05265at 1169.370 kb on + strandat 1169.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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1,166,516 + PS417_05255 0.36 -0.2
1,166,566 - PS417_05255 0.42 -0.6
1,166,632 - PS417_05255 0.49 -0.2
1,166,667 + PS417_05255 0.53 +0.2
1,166,668 - PS417_05255 0.53 -0.4
1,166,670 + PS417_05255 0.54 +1.4
1,166,670 + PS417_05255 0.54 +0.4
1,166,670 + PS417_05255 0.54 -0.2
1,166,671 - PS417_05255 0.54 -0.3
1,166,707 - PS417_05255 0.58 -1.3
1,167,228 - +0.3
1,167,330 - +0.0
1,167,330 - +0.2
1,167,330 - -0.5
1,167,494 - PS417_05260 0.21 +0.0
1,167,494 - PS417_05260 0.21 +0.1
1,167,494 - PS417_05260 0.21 -0.8
1,167,627 - PS417_05260 0.30 -0.5
1,167,627 - PS417_05260 0.30 -0.0
1,167,641 + PS417_05260 0.32 +0.7
1,167,642 - PS417_05260 0.32 +0.0
1,167,642 - PS417_05260 0.32 +0.1
1,167,642 - PS417_05260 0.32 +0.8
1,167,685 + PS417_05260 0.35 +0.9
1,167,689 + PS417_05260 0.35 +0.3
1,167,689 + +0.4
1,167,690 - PS417_05260 0.35 +0.2
1,167,690 - PS417_05260 0.35 +1.6
1,167,691 + PS417_05260 0.35 +1.7
1,167,697 - PS417_05260 0.36 +0.4
1,167,927 - PS417_05260 0.53 -0.0
1,168,090 + PS417_05260 0.65 +0.3
1,168,091 - PS417_05260 0.65 +0.4
1,168,261 + PS417_05260 0.78 +0.0
1,168,283 + PS417_05260 0.79 -1.9
1,168,284 - PS417_05260 0.79 +1.2
1,168,284 - PS417_05260 0.79 -0.3
1,168,336 + PS417_05260 0.83 +3.8
1,168,336 + PS417_05260 0.83 -1.2
1,168,557 - -0.0
1,168,636 - -0.8
1,168,668 + PS417_05265 0.13 +1.1
1,168,672 - PS417_05265 0.14 +0.4
1,169,001 + PS417_05265 0.57 +1.7
1,169,370 + -0.8
1,169,371 - +0.2

Or see this region's nucleotide sequence