Strain Fitness in Pseudomonas simiae WCS417 around PS417_04650

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04645 and PS417_04650 overlap by 4 nucleotidesPS417_04650 and PS417_04655 are separated by 4 nucleotidesPS417_04655 and PS417_04660 are separated by 15 nucleotides PS417_04645: PS417_04645 - UDP-N-acetylmuramate--alanine ligase, at 1,028,769 to 1,030,214 _04645 PS417_04650: PS417_04650 - D-alanine--D-alanine ligase, at 1,030,211 to 1,031,167 _04650 PS417_04655: PS417_04655 - cell division protein FtsQ, at 1,031,172 to 1,032,041 _04655 PS417_04660: PS417_04660 - cell division protein FtsA, at 1,032,057 to 1,033,319 _04660 Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -2 -1 0 1at 1030.824 kb on + strand, within PS417_04650at 1030.880 kb on + strand, within PS417_04650at 1031.086 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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1,030,824 + PS417_04650 0.64 -1.8
1,030,880 + PS417_04650 0.70 +1.4
1,031,086 + +1.2

Or see this region's nucleotide sequence