Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27465 and PS417_27470 are separated by 270 nucleotides PS417_27470 and PS417_27475 are separated by 88 nucleotides PS417_27475 and PS417_27480 overlap by 1 nucleotides
PS417_27465: PS417_27465 - cystathionine gamma-synthase, at 5,926,940 to 5,928,835
_27465
PS417_27470: PS417_27470 - threonine transporter RhtB, at 5,929,106 to 5,929,738
_27470
PS417_27475: PS417_27475 - membrane protein, at 5,929,827 to 5,930,399
_27475
PS417_27480: PS417_27480 - ABC transporter ATP-binding protein, at 5,930,399 to 5,932,309
_27480
Position (kb) 5929
5930
5931 Strain fitness (log2 ratio) -2
-1
0
1 at 5928.856 kb on + strand at 5928.863 kb on + strand at 5928.863 kb on + strand at 5928.902 kb on + strand at 5928.902 kb on + strand at 5928.934 kb on - strand at 5929.108 kb on - strand at 5929.196 kb on - strand, within PS417_27470 at 5929.238 kb on - strand, within PS417_27470 at 5929.238 kb on - strand, within PS417_27470 at 5929.293 kb on + strand, within PS417_27470 at 5929.337 kb on + strand, within PS417_27470 at 5929.485 kb on + strand, within PS417_27470 at 5929.486 kb on - strand, within PS417_27470 at 5929.521 kb on + strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.620 kb on + strand, within PS417_27470 at 5929.639 kb on - strand, within PS417_27470 at 5929.726 kb on + strand at 5929.778 kb on + strand at 5929.779 kb on - strand at 5929.805 kb on - strand at 5929.813 kb on - strand at 5929.853 kb on + strand at 5929.955 kb on - strand, within PS417_27475 at 5930.311 kb on + strand, within PS417_27475 at 5930.484 kb on - strand at 5930.871 kb on - strand, within PS417_27480 at 5931.175 kb on - strand, within PS417_27480 at 5931.175 kb on - strand, within PS417_27480 at 5931.187 kb on + strand, within PS417_27480
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,928,856 + +0.2 5,928,863 + -0.8 5,928,863 + -0.8 5,928,902 + -0.2 5,928,902 + -0.4 5,928,934 - +0.1 5,929,108 - +0.5 5,929,196 - PS417_27470 0.14 -0.6 5,929,238 - PS417_27470 0.21 +1.0 5,929,238 - PS417_27470 0.21 +0.4 5,929,293 + PS417_27470 0.30 +0.1 5,929,337 + PS417_27470 0.36 +0.2 5,929,485 + PS417_27470 0.60 +0.2 5,929,486 - PS417_27470 0.60 -0.3 5,929,521 + PS417_27470 0.66 +0.0 5,929,522 - PS417_27470 0.66 -0.8 5,929,522 - PS417_27470 0.66 +0.2 5,929,522 - PS417_27470 0.66 +0.2 5,929,522 - PS417_27470 0.66 -0.0 5,929,620 + PS417_27470 0.81 -0.3 5,929,639 - PS417_27470 0.84 -1.2 5,929,726 + -0.6 5,929,778 + -0.2 5,929,779 - +0.3 5,929,805 - -0.4 5,929,813 - +0.1 5,929,853 + +1.0 5,929,955 - PS417_27475 0.22 -2.5 5,930,311 + PS417_27475 0.84 -0.5 5,930,484 - +1.0 5,930,871 - PS417_27480 0.25 +0.1 5,931,175 - PS417_27480 0.41 -0.2 5,931,175 - PS417_27480 0.41 +0.0 5,931,187 + PS417_27480 0.41 +1.4
Or see this region's nucleotide sequence