Strain Fitness in Pseudomonas simiae WCS417 around PS417_23170

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23160 and PS417_23165 are separated by 29 nucleotidesPS417_23165 and PS417_23170 are separated by 92 nucleotidesPS417_23170 and PS417_23175 are separated by 14 nucleotidesPS417_23175 and PS417_23180 are separated by 3 nucleotides PS417_23160: PS417_23160 - 50S rRNA methyltransferase, at 5,020,271 to 5,021,419 _23160 PS417_23165: PS417_23165 - nucleoside diphosphate kinase, at 5,021,449 to 5,021,874 _23165 PS417_23170: PS417_23170 - FeS assembly protein IscX, at 5,021,967 to 5,022,167 _23170 PS417_23175: PS417_23175 - 2Fe-2S ferredoxin, at 5,022,182 to 5,022,523 _23175 PS417_23180: PS417_23180 - chaperone protein HscA, at 5,022,527 to 5,024,389 _23180 Position (kb) 5021 5022 5023Strain fitness (log2 ratio) -2 -1 0 1at 5021.439 kb on - strandat 5021.895 kb on - strandat 5021.923 kb on - strandat 5021.925 kb on - strandat 5022.145 kb on - strand, within PS417_23170at 5022.145 kb on - strand, within PS417_23170at 5022.159 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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5,021,439 - -0.8
5,021,895 - +0.1
5,021,923 - -1.8
5,021,925 - -1.6
5,022,145 - PS417_23170 0.89 -0.7
5,022,145 - PS417_23170 0.89 -0.8
5,022,159 - -0.9

Or see this region's nucleotide sequence