Strain Fitness in Pseudomonas simiae WCS417 around PS417_01790

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01780 and PS417_01785 overlap by 4 nucleotidesPS417_01785 and PS417_01790 are separated by 266 nucleotidesPS417_01790 and PS417_01795 overlap by 8 nucleotides PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845 _01780 PS417_01785: PS417_01785 - D-tyrosyl-tRNA(Tyr) deacylase, at 396,842 to 397,279 _01785 PS417_01790: PS417_01790 - glucan biosynthesis protein G, at 397,546 to 399,282 _01790 PS417_01795: PS417_01795 - glucosyltransferase MdoH, at 399,275 to 401,845 _01795 Position (kb) 397 398 399 400Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 396.570 kb on + strand, within PS417_01780at 396.570 kb on + strand, within PS417_01780at 396.570 kb on + strand, within PS417_01780at 396.668 kb on + strand, within PS417_01780at 396.669 kb on - strand, within PS417_01780at 396.979 kb on - strand, within PS417_01785at 396.995 kb on + strand, within PS417_01785at 397.174 kb on - strandat 397.299 kb on + strandat 397.332 kb on - strandat 397.368 kb on + strandat 397.372 kb on + strandat 397.372 kb on + strandat 397.417 kb on + strandat 397.421 kb on + strandat 397.422 kb on - strandat 397.495 kb on + strandat 397.495 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.497 kb on + strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.498 kb on - strandat 397.502 kb on - strandat 397.554 kb on + strandat 397.708 kb on + strandat 397.766 kb on - strand, within PS417_01790at 397.912 kb on + strand, within PS417_01790at 397.912 kb on + strand, within PS417_01790at 397.913 kb on - strand, within PS417_01790at 398.087 kb on - strand, within PS417_01790at 398.350 kb on + strand, within PS417_01790at 398.351 kb on - strand, within PS417_01790at 398.351 kb on - strand, within PS417_01790at 398.351 kb on - strand, within PS417_01790at 398.389 kb on + strand, within PS417_01790at 398.576 kb on - strand, within PS417_01790at 398.576 kb on - strand, within PS417_01790at 398.576 kb on - strand, within PS417_01790at 398.869 kb on + strand, within PS417_01790at 398.870 kb on - strand, within PS417_01790at 399.259 kb on + strandat 399.259 kb on + strandat 399.259 kb on + strandat 399.280 kb on + strandat 399.281 kb on - strandat 399.315 kb on - strandat 399.328 kb on - strandat 399.657 kb on + strand, within PS417_01795at 399.658 kb on - strand, within PS417_01795at 399.749 kb on + strand, within PS417_01795at 399.750 kb on - strand, within PS417_01795at 399.840 kb on + strand, within PS417_01795at 399.958 kb on + strand, within PS417_01795at 399.958 kb on + strand, within PS417_01795at 399.959 kb on - strand, within PS417_01795at 400.144 kb on + strand, within PS417_01795at 400.144 kb on + strand, within PS417_01795at 400.144 kb on + strand, within PS417_01795at 400.227 kb on - strand, within PS417_01795

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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396,570 + PS417_01780 0.72 +2.0
396,570 + PS417_01780 0.72 -1.3
396,570 + PS417_01780 0.72 -0.2
396,668 + PS417_01780 0.82 +0.4
396,669 - PS417_01780 0.82 -1.3
396,979 - PS417_01785 0.31 -1.0
396,995 + PS417_01785 0.35 -0.3
397,174 - +2.0
397,299 + -0.4
397,332 - -0.3
397,368 + -0.0
397,372 + -0.0
397,372 + -0.3
397,417 + -0.7
397,421 + +0.2
397,422 - -1.3
397,495 + +1.2
397,495 + +0.3
397,497 + +0.1
397,497 + -0.1
397,497 + -0.1
397,497 + +1.0
397,497 + -0.2
397,497 + +1.0
397,497 + -0.3
397,497 + -0.1
397,497 + -0.3
397,497 + -0.5
397,497 + -0.1
397,497 + +0.7
397,497 + -0.4
397,498 - -1.6
397,498 - -2.4
397,498 - -1.0
397,498 - -2.4
397,498 - -0.3
397,498 - -1.8
397,498 - -2.0
397,498 - -1.4
397,498 - -1.0
397,498 - -2.0
397,498 - -1.1
397,498 - -2.0
397,498 - -0.7
397,498 - -2.1
397,498 - -1.7
397,498 - -2.2
397,502 - -2.3
397,554 + -1.9
397,708 + -2.1
397,766 - PS417_01790 0.13 -1.2
397,912 + PS417_01790 0.21 -1.2
397,912 + PS417_01790 0.21 -2.3
397,913 - PS417_01790 0.21 -1.8
398,087 - PS417_01790 0.31 -1.3
398,350 + PS417_01790 0.46 -0.6
398,351 - PS417_01790 0.46 -1.4
398,351 - PS417_01790 0.46 -2.8
398,351 - PS417_01790 0.46 -0.3
398,389 + PS417_01790 0.49 -1.5
398,576 - PS417_01790 0.59 -0.0
398,576 - PS417_01790 0.59 -1.4
398,576 - PS417_01790 0.59 -0.0
398,869 + PS417_01790 0.76 -2.2
398,870 - PS417_01790 0.76 -1.1
399,259 + -1.3
399,259 + -1.9
399,259 + +1.2
399,280 + -1.8
399,281 - -2.4
399,315 - -0.0
399,328 - -2.0
399,657 + PS417_01795 0.15 -2.0
399,658 - PS417_01795 0.15 -2.7
399,749 + PS417_01795 0.18 -1.1
399,750 - PS417_01795 0.18 -1.2
399,840 + PS417_01795 0.22 -0.8
399,958 + PS417_01795 0.27 -1.6
399,958 + PS417_01795 0.27 -2.0
399,959 - PS417_01795 0.27 -1.9
400,144 + PS417_01795 0.34 -4.0
400,144 + PS417_01795 0.34 -1.7
400,144 + PS417_01795 0.34 -2.0
400,227 - PS417_01795 0.37 -1.7

Or see this region's nucleotide sequence