Strain Fitness in Pseudomonas simiae WCS417 around PS417_14560

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,181,423	+		PS417_14550	0.81	-0.6
3,181,424	-		PS417_14550	0.81	-1.0
3,181,447	+		PS417_14550	0.83	+0.7
3,181,819	-		PS417_14555	0.16	+1.7
3,181,915	+		PS417_14555	0.35	-0.6
3,182,113	+		PS417_14555	0.76	+0.3
3,182,113	+		PS417_14555	0.76	-0.4
3,182,114	-				+0.7
3,182,114	-		PS417_14555	0.76	+0.6
3,182,557	+				-0.9
3,182,559	-				+0.6
3,182,780	+		PS417_14560	0.17	-0.3
3,183,336	+		PS417_14560	0.43	+1.2
3,183,494	+		PS417_14560	0.50	-1.4
3,183,599	+		PS417_14560	0.55	-0.9
3,183,620	+		PS417_14560	0.56	-0.2
3,183,696	-		PS417_14560	0.59	-1.1
3,183,821	+				-0.6
3,183,822	-		PS417_14560	0.65	+0.2
3,184,076	+		PS417_14560	0.77	-0.3
3,184,077	-		PS417_14560	0.77	+0.6
3,184,095	+		PS417_14560	0.78	-0.3
3,184,109	-		PS417_14560	0.79	-0.6
3,184,165	+		PS417_14560	0.81	-0.1
3,184,165	+		PS417_14560	0.81	-0.4
3,184,166	-		PS417_14560	0.81	-1.4
3,184,185	-		PS417_14560	0.82	+0.1
3,184,198	+		PS417_14560	0.83	-1.3
3,184,317	-		PS417_14560	0.88	-0.6
3,184,334	+		PS417_14560	0.89	-0.6
3,184,334	+		PS417_14560	0.89	-1.4
3,184,335	-		PS417_14560	0.89	-0.6
3,184,363	+				-0.6
3,184,363	+				-0.9
3,184,364	-				+0.1
3,184,364	-				+0.3
3,184,364	-				-0.7
3,184,367	+				+0.1
3,184,388	+				-0.5
3,184,475	+				-0.4
3,184,476	-				-0.3
3,184,476	-				+1.1
3,184,523	+				-1.1
3,184,524	-				-2.7
3,184,560	-				-0.5
3,184,638	+				+0.0
3,184,639	-				-0.8
3,184,732	-				-0.5
3,184,908	+		PS417_14565	0.11	+0.1
3,185,111	-		PS417_14565	0.25	+0.6
3,185,197	-		PS417_14565	0.31	-0.3
3,185,226	+		PS417_14565	0.33	-0.6
3,185,227	-		PS417_14565	0.33	-0.3
3,185,227	-				+1.0