Strain Fitness in Pseudomonas simiae WCS417 around PS417_00755

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00750 and PS417_00755 are separated by 2 nucleotidesPS417_00755 and PS417_00760 are separated by 367 nucleotides PS417_00750: PS417_00750 - N-glycosyltransferase, at 159,282 to 160,622 _00750 PS417_00755: PS417_00755 - biofilm PGA synthesis protein PgaD, at 160,625 to 161,107 _00755 PS417_00760: PS417_00760 - ShlB family hemolysin secretion/activation protein, at 161,475 to 163,196 _00760 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1at 159.753 kb on + strand, within PS417_00750at 159.754 kb on - strand, within PS417_00750at 159.805 kb on - strand, within PS417_00750at 159.805 kb on - strand, within PS417_00750at 159.805 kb on - strand, within PS417_00750at 159.805 kb on - strand, within PS417_00750at 159.996 kb on - strand, within PS417_00750at 160.095 kb on + strand, within PS417_00750at 160.096 kb on - strand, within PS417_00750at 160.284 kb on - strand, within PS417_00750at 160.284 kb on - strand, within PS417_00750at 160.284 kb on - strand, within PS417_00750at 160.309 kb on - strand, within PS417_00750at 160.651 kb on + strandat 160.651 kb on + strandat 160.651 kb on + strandat 160.652 kb on - strandat 160.652 kb on - strandat 160.652 kb on - strandat 160.805 kb on + strand, within PS417_00755at 161.106 kb on - strandat 161.157 kb on + strandat 161.221 kb on + strandat 161.222 kb on - strandat 161.261 kb on - strandat 161.344 kb on - strandat 161.344 kb on - strandat 161.434 kb on + strandat 161.779 kb on - strand, within PS417_00760at 161.779 kb on - strand, within PS417_00760at 161.874 kb on + strand, within PS417_00760at 161.874 kb on + strand, within PS417_00760

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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159,753 + PS417_00750 0.35 -0.1
159,754 - PS417_00750 0.35 -0.7
159,805 - PS417_00750 0.39 -0.3
159,805 - PS417_00750 0.39 +0.9
159,805 - PS417_00750 0.39 +0.1
159,805 - PS417_00750 0.39 -1.3
159,996 - PS417_00750 0.53 -1.7
160,095 + PS417_00750 0.61 +0.0
160,096 - PS417_00750 0.61 -0.0
160,284 - PS417_00750 0.75 -0.3
160,284 - PS417_00750 0.75 +1.2
160,284 - PS417_00750 0.75 +1.0
160,309 - PS417_00750 0.77 -1.0
160,651 + +0.0
160,651 + +0.5
160,651 + -1.2
160,652 - +0.0
160,652 - +0.8
160,652 - +0.4
160,805 + PS417_00755 0.37 -2.6
161,106 - -1.2
161,157 + -0.2
161,221 + +1.0
161,222 - +0.4
161,261 - +0.4
161,344 - +1.5
161,344 - +0.3
161,434 + +0.0
161,779 - PS417_00760 0.18 -0.3
161,779 - PS417_00760 0.18 -1.0
161,874 + PS417_00760 0.23 +1.2
161,874 + PS417_00760 0.23 +0.0

Or see this region's nucleotide sequence