Strain Fitness in Pseudomonas simiae WCS417 around PS417_05550

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
1,248,580	+		PS417_05545	0.27	-1.0
1,248,580	+		PS417_05545	0.27	+0.0
1,248,581	-		PS417_05545	0.27	-0.1
1,248,590	+		PS417_05545	0.29	-0.0
1,248,590	-				+0.3
1,248,590	-		PS417_05545	0.29	-0.0
1,248,800	-		PS417_05545	0.57	-0.7
1,248,800	-		PS417_05545	0.57	+0.2
1,249,083	-				-0.3
1,249,095	+				-0.5
1,249,096	-				-0.1
1,249,096	-				+0.1
1,249,375	+		PS417_05550	0.39	+0.4
1,249,375	+		PS417_05550	0.39	-0.2
1,249,376	-				-0.6
1,249,559	-		PS417_05550	0.67	-0.3
1,249,600	+		PS417_05550	0.73	-0.6
1,249,610	-		PS417_05550	0.74	-0.3
1,249,610	-		PS417_05550	0.74	-0.2
1,249,782	+				+0.3
1,249,783	-				+0.3
1,249,872	+		PS417_05555	0.12	+0.6
1,249,872	+		PS417_05555	0.12	-0.9
1,249,873	-		PS417_05555	0.12	+0.1
1,250,062	-		PS417_05555	0.38	+0.6
1,250,325	+		PS417_05555	0.73	-0.8
1,250,455	-				-0.5
1,250,520	+				-1.4
1,250,521	-				-0.1
1,250,521	-				+0.1
1,250,556	+				+0.5
1,250,557	-				+0.7
1,250,557	-				-1.3
1,250,557	-				-0.2
1,250,652	-				-0.7
1,250,664	+				+0.8
1,250,664	+				-0.6
1,250,664	+				+1.2
1,250,665	-				-0.2
1,250,665	-				-0.3
1,250,668	-				-0.6
1,250,668	-				-0.2
1,250,668	-				-0.8
1,250,706	-				-0.2
1,250,712	-				-0.9