Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05535 and PS417_05540 overlap by 4 nucleotides PS417_05540 and PS417_05545 are separated by 157 nucleotides PS417_05545 and PS417_05550 overlap by 4 nucleotides
PS417_05535: PS417_05535 - Fis family transcriptional regulator, at 1,244,974 to 1,246,323
_05535
PS417_05540: PS417_05540 - histidine kinase, at 1,246,320 to 1,248,221
_05540
PS417_05545: PS417_05545 - amino acid ABC transporter ATP-binding protein, at 1,248,379 to 1,249,113
_05545
PS417_05550: PS417_05550 - amino acid ABC transporter permease, at 1,249,110 to 1,249,781
_05550
Position (kb) 1246
1247
1248
1249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1245.393 kb on - strand at 1245.393 kb on - strand, within PS417_05535 at 1245.393 kb on - strand, within PS417_05535 at 1245.529 kb on + strand, within PS417_05535 at 1246.255 kb on + strand at 1246.255 kb on + strand at 1246.255 kb on + strand at 1246.256 kb on - strand at 1246.256 kb on - strand at 1246.563 kb on - strand, within PS417_05540 at 1246.563 kb on - strand, within PS417_05540 at 1246.563 kb on - strand, within PS417_05540 at 1246.617 kb on - strand, within PS417_05540 at 1247.470 kb on + strand, within PS417_05540 at 1247.473 kb on + strand, within PS417_05540 at 1247.473 kb on + strand, within PS417_05540 at 1247.695 kb on + strand, within PS417_05540 at 1247.696 kb on - strand, within PS417_05540 at 1247.696 kb on - strand at 1247.801 kb on - strand, within PS417_05540 at 1247.823 kb on - strand at 1247.860 kb on + strand, within PS417_05540 at 1247.860 kb on + strand, within PS417_05540 at 1247.860 kb on + strand, within PS417_05540 at 1247.860 kb on + strand, within PS417_05540 at 1247.861 kb on - strand, within PS417_05540 at 1247.861 kb on - strand, within PS417_05540 at 1247.861 kb on - strand, within PS417_05540 at 1247.861 kb on - strand, within PS417_05540 at 1247.990 kb on - strand, within PS417_05540 at 1247.990 kb on - strand, within PS417_05540 at 1247.996 kb on - strand, within PS417_05540 at 1248.076 kb on + strand at 1248.080 kb on - strand at 1248.580 kb on + strand, within PS417_05545 at 1248.580 kb on + strand, within PS417_05545 at 1248.581 kb on - strand, within PS417_05545 at 1248.590 kb on + strand, within PS417_05545 at 1248.590 kb on - strand at 1248.590 kb on - strand, within PS417_05545 at 1248.800 kb on - strand, within PS417_05545 at 1248.800 kb on - strand, within PS417_05545 at 1249.083 kb on - strand at 1249.095 kb on + strand at 1249.096 kb on - strand at 1249.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 1,245,393 - +2.6 1,245,393 - PS417_05535 0.31 -1.7 1,245,393 - PS417_05535 0.31 -1.2 1,245,529 + PS417_05535 0.41 -3.4 1,246,255 + +0.4 1,246,255 + -0.3 1,246,255 + -0.4 1,246,256 - -0.3 1,246,256 - -0.5 1,246,563 - PS417_05540 0.13 +0.3 1,246,563 - PS417_05540 0.13 -0.6 1,246,563 - PS417_05540 0.13 -3.2 1,246,617 - PS417_05540 0.16 -0.3 1,247,470 + PS417_05540 0.60 +0.1 1,247,473 + PS417_05540 0.61 +0.3 1,247,473 + PS417_05540 0.61 +0.0 1,247,695 + PS417_05540 0.72 -1.5 1,247,696 - PS417_05540 0.72 -0.5 1,247,696 - +1.0 1,247,801 - PS417_05540 0.78 -0.0 1,247,823 - +0.6 1,247,860 + PS417_05540 0.81 +0.2 1,247,860 + PS417_05540 0.81 +0.4 1,247,860 + PS417_05540 0.81 -1.8 1,247,860 + PS417_05540 0.81 +1.1 1,247,861 - PS417_05540 0.81 +0.2 1,247,861 - PS417_05540 0.81 -0.1 1,247,861 - PS417_05540 0.81 -0.3 1,247,861 - PS417_05540 0.81 -0.4 1,247,990 - PS417_05540 0.88 +0.2 1,247,990 - PS417_05540 0.88 -0.2 1,247,996 - PS417_05540 0.88 -0.1 1,248,076 + -0.6 1,248,080 - +1.2 1,248,580 + PS417_05545 0.27 -1.0 1,248,580 + PS417_05545 0.27 +0.0 1,248,581 - PS417_05545 0.27 -0.1 1,248,590 + PS417_05545 0.29 -0.0 1,248,590 - +0.3 1,248,590 - PS417_05545 0.29 -0.0 1,248,800 - PS417_05545 0.57 -0.7 1,248,800 - PS417_05545 0.57 +0.2 1,249,083 - -0.3 1,249,095 + -0.5 1,249,096 - -0.1 1,249,096 - +0.1
Or see this region's nucleotide sequence