Strain Fitness in Pseudomonas simiae WCS417 around PS417_04015

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04010 and PS417_04015 overlap by 4 nucleotidesPS417_04015 and PS417_04020 are separated by 11 nucleotidesPS417_04020 and PS417_04025 are separated by 20 nucleotides PS417_04010: PS417_04010 - glycine/betaine ABC transporter ATP-binding protein, at 900,994 to 902,151 _04010 PS417_04015: PS417_04015 - choline ABC transporter permease, at 902,148 to 902,801 _04015 PS417_04020: PS417_04020 - glycine/betaine ABC transporter substrate-binding protein, at 902,813 to 903,709 _04020 PS417_04025: PS417_04025 - glycine/betaine ABC transporter permease, at 903,730 to 904,446 _04025 Position (kb) 902 903Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 901.148 kb on + strand, within PS417_04010at 901.148 kb on + strand, within PS417_04010at 901.148 kb on + strand, within PS417_04010at 901.149 kb on - strand, within PS417_04010at 901.262 kb on + strand, within PS417_04010at 901.262 kb on + strand, within PS417_04010at 901.262 kb on + strand, within PS417_04010at 901.263 kb on - strand, within PS417_04010at 901.301 kb on + strand, within PS417_04010at 901.302 kb on - strand, within PS417_04010at 901.420 kb on - strand, within PS417_04010at 901.441 kb on - strand, within PS417_04010at 902.080 kb on + strandat 902.080 kb on + strandat 902.081 kb on - strandat 902.081 kb on - strandat 902.081 kb on - strandat 902.285 kb on + strand, within PS417_04015at 902.285 kb on + strand, within PS417_04015at 902.285 kb on + strand, within PS417_04015at 902.290 kb on - strand, within PS417_04015at 902.485 kb on + strand, within PS417_04015at 902.486 kb on - strand, within PS417_04015at 902.486 kb on - strand, within PS417_04015at 902.814 kb on + strandat 903.015 kb on + strand, within PS417_04020at 903.015 kb on + strand, within PS417_04020at 903.016 kb on - strand, within PS417_04020at 903.075 kb on + strand, within PS417_04020at 903.076 kb on - strand, within PS417_04020at 903.171 kb on + strand, within PS417_04020at 903.171 kb on + strand, within PS417_04020at 903.171 kb on + strand, within PS417_04020at 903.172 kb on - strand, within PS417_04020at 903.172 kb on - strand, within PS417_04020at 903.336 kb on + strand, within PS417_04020at 903.336 kb on + strand, within PS417_04020at 903.337 kb on - strand, within PS417_04020at 903.408 kb on + strand, within PS417_04020at 903.448 kb on - strand, within PS417_04020at 903.574 kb on - strand, within PS417_04020at 903.731 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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901,148 + PS417_04010 0.13 -1.5
901,148 + PS417_04010 0.13 +2.2
901,148 + PS417_04010 0.13 +1.6
901,149 - PS417_04010 0.13 +0.2
901,262 + PS417_04010 0.23 -0.0
901,262 + PS417_04010 0.23 +0.6
901,262 + PS417_04010 0.23 -1.2
901,263 - PS417_04010 0.23 +1.5
901,301 + PS417_04010 0.27 +0.9
901,302 - PS417_04010 0.27 +1.8
901,420 - PS417_04010 0.37 +0.6
901,441 - PS417_04010 0.39 -3.1
902,080 + -3.1
902,080 + -0.2
902,081 - -1.6
902,081 - -0.2
902,081 - -1.5
902,285 + PS417_04015 0.21 +1.6
902,285 + PS417_04015 0.21 +0.0
902,285 + PS417_04015 0.21 -1.3
902,290 - PS417_04015 0.22 +0.5
902,485 + PS417_04015 0.52 +1.5
902,486 - PS417_04015 0.52 -1.5
902,486 - PS417_04015 0.52 +1.7
902,814 + +0.6
903,015 + PS417_04020 0.23 +0.4
903,015 + PS417_04020 0.23 -0.2
903,016 - PS417_04020 0.23 -1.6
903,075 + PS417_04020 0.29 +1.4
903,076 - PS417_04020 0.29 -0.5
903,171 + PS417_04020 0.40 +1.0
903,171 + PS417_04020 0.40 +0.4
903,171 + PS417_04020 0.40 +0.9
903,172 - PS417_04020 0.40 -0.7
903,172 - PS417_04020 0.40 -2.3
903,336 + PS417_04020 0.58 -0.1
903,336 + PS417_04020 0.58 +1.8
903,337 - PS417_04020 0.58 -1.5
903,408 + PS417_04020 0.66 -0.9
903,448 - PS417_04020 0.71 -2.0
903,574 - PS417_04020 0.85 -0.6
903,731 + -1.2

Or see this region's nucleotide sequence