Strain Fitness in Pseudomonas simiae WCS417 around PS417_27920

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27910 and PS417_27915 are separated by 0 nucleotidesPS417_27915 and PS417_27920 overlap by 4 nucleotidesPS417_27920 and PS417_27925 overlap by 4 nucleotides PS417_27910: PS417_27910 - PppA, at 6,018,634 to 6,019,353 _27910 PS417_27915: PS417_27915 - type VI secretion system protein ImpM, at 6,019,354 to 6,020,007 _27915 PS417_27920: PS417_27920 - type VI secretion protein IcmF, at 6,020,004 to 6,023,504 _27920 PS417_27925: PS417_27925 - hypothetical protein, at 6,023,501 to 6,024,790 _27925 Position (kb) 6020 6021 6022 6023 6024Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6019.078 kb on + strand, within PS417_27910at 6019.151 kb on + strand, within PS417_27910at 6019.215 kb on - strand, within PS417_27910at 6019.215 kb on - strand, within PS417_27910at 6019.340 kb on + strandat 6019.341 kb on - strandat 6019.355 kb on + strandat 6019.355 kb on + strandat 6019.356 kb on - strandat 6019.356 kb on - strandat 6019.356 kb on - strandat 6019.356 kb on - strandat 6019.440 kb on + strand, within PS417_27915at 6019.441 kb on - strand, within PS417_27915at 6019.507 kb on - strand, within PS417_27915at 6019.693 kb on + strand, within PS417_27915at 6019.694 kb on - strand, within PS417_27915at 6019.853 kb on + strand, within PS417_27915at 6019.854 kb on - strand, within PS417_27915at 6019.989 kb on - strandat 6020.240 kb on + strandat 6020.241 kb on - strandat 6020.309 kb on - strandat 6020.533 kb on + strand, within PS417_27920at 6020.546 kb on - strand, within PS417_27920at 6020.557 kb on + strand, within PS417_27920at 6020.557 kb on + strand, within PS417_27920at 6020.557 kb on + strand, within PS417_27920at 6020.558 kb on - strand, within PS417_27920at 6020.558 kb on - strand, within PS417_27920at 6020.729 kb on + strand, within PS417_27920at 6020.729 kb on + strand, within PS417_27920at 6020.730 kb on - strand, within PS417_27920at 6020.730 kb on - strand, within PS417_27920at 6020.890 kb on + strand, within PS417_27920at 6020.890 kb on + strand, within PS417_27920at 6020.890 kb on + strand, within PS417_27920at 6020.890 kb on + strand, within PS417_27920at 6021.284 kb on - strand, within PS417_27920at 6021.562 kb on + strand, within PS417_27920at 6021.767 kb on - strand, within PS417_27920at 6021.767 kb on - strand, within PS417_27920at 6021.812 kb on - strand, within PS417_27920at 6022.096 kb on + strand, within PS417_27920at 6022.096 kb on + strand, within PS417_27920at 6022.096 kb on + strand, within PS417_27920at 6022.097 kb on - strand, within PS417_27920at 6022.097 kb on - strand, within PS417_27920at 6022.097 kb on - strand, within PS417_27920at 6022.114 kb on + strand, within PS417_27920at 6022.273 kb on + strand, within PS417_27920at 6022.274 kb on - strand, within PS417_27920at 6022.391 kb on - strandat 6022.498 kb on + strand, within PS417_27920at 6022.765 kb on + strand, within PS417_27920at 6022.766 kb on - strand, within PS417_27920at 6022.766 kb on - strand, within PS417_27920at 6023.134 kb on + strand, within PS417_27920at 6023.135 kb on - strand, within PS417_27920at 6023.135 kb on - strand, within PS417_27920at 6023.247 kb on - strandat 6023.799 kb on + strand, within PS417_27925at 6023.906 kb on - strand, within PS417_27925at 6024.295 kb on - strand, within PS417_27925at 6024.295 kb on - strand, within PS417_27925at 6024.313 kb on - strand, within PS417_27925

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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6,019,078 + PS417_27910 0.62 -3.0
6,019,151 + PS417_27910 0.72 +0.2
6,019,215 - PS417_27910 0.81 -2.0
6,019,215 - PS417_27910 0.81 -0.4
6,019,340 + -0.5
6,019,341 - -0.1
6,019,355 + -0.4
6,019,355 + +0.8
6,019,356 - -0.8
6,019,356 - -1.9
6,019,356 - +1.6
6,019,356 - -1.6
6,019,440 + PS417_27915 0.13 -0.2
6,019,441 - PS417_27915 0.13 +0.2
6,019,507 - PS417_27915 0.23 -1.9
6,019,693 + PS417_27915 0.52 -1.0
6,019,694 - PS417_27915 0.52 -0.2
6,019,853 + PS417_27915 0.76 -2.4
6,019,854 - PS417_27915 0.76 -1.2
6,019,989 - +0.8
6,020,240 + -0.0
6,020,241 - -1.4
6,020,309 - -1.3
6,020,533 + PS417_27920 0.15 +1.2
6,020,546 - PS417_27920 0.15 +0.2
6,020,557 + PS417_27920 0.16 +1.2
6,020,557 + PS417_27920 0.16 +0.8
6,020,557 + PS417_27920 0.16 -1.4
6,020,558 - PS417_27920 0.16 +1.0
6,020,558 - PS417_27920 0.16 +0.1
6,020,729 + PS417_27920 0.21 +0.7
6,020,729 + PS417_27920 0.21 -2.1
6,020,730 - PS417_27920 0.21 +0.8
6,020,730 - PS417_27920 0.21 -0.1
6,020,890 + PS417_27920 0.25 -0.7
6,020,890 + PS417_27920 0.25 +1.0
6,020,890 + PS417_27920 0.25 -3.1
6,020,890 + PS417_27920 0.25 +0.9
6,021,284 - PS417_27920 0.37 +0.6
6,021,562 + PS417_27920 0.45 +2.4
6,021,767 - PS417_27920 0.50 +1.0
6,021,767 - PS417_27920 0.50 +0.9
6,021,812 - PS417_27920 0.52 -2.2
6,022,096 + PS417_27920 0.60 +1.4
6,022,096 + PS417_27920 0.60 +1.7
6,022,096 + PS417_27920 0.60 +0.6
6,022,097 - PS417_27920 0.60 +0.4
6,022,097 - PS417_27920 0.60 +0.1
6,022,097 - PS417_27920 0.60 +1.3
6,022,114 + PS417_27920 0.60 -0.7
6,022,273 + PS417_27920 0.65 +0.4
6,022,274 - PS417_27920 0.65 -0.8
6,022,391 - +2.6
6,022,498 + PS417_27920 0.71 -1.0
6,022,765 + PS417_27920 0.79 +1.2
6,022,766 - PS417_27920 0.79 -0.8
6,022,766 - PS417_27920 0.79 +0.3
6,023,134 + PS417_27920 0.89 -1.6
6,023,135 - PS417_27920 0.89 -0.2
6,023,135 - PS417_27920 0.89 +0.7
6,023,247 - -0.4
6,023,799 + PS417_27925 0.23 -0.1
6,023,906 - PS417_27925 0.31 +0.8
6,024,295 - PS417_27925 0.62 -1.7
6,024,295 - PS417_27925 0.62 +3.3
6,024,313 - PS417_27925 0.63 -0.5

Or see this region's nucleotide sequence