Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27910 and PS417_27915 are separated by 0 nucleotides PS417_27915 and PS417_27920 overlap by 4 nucleotides PS417_27920 and PS417_27925 overlap by 4 nucleotides
PS417_27910: PS417_27910 - PppA, at 6,018,634 to 6,019,353
_27910
PS417_27915: PS417_27915 - type VI secretion system protein ImpM, at 6,019,354 to 6,020,007
_27915
PS417_27920: PS417_27920 - type VI secretion protein IcmF, at 6,020,004 to 6,023,504
_27920
PS417_27925: PS417_27925 - hypothetical protein, at 6,023,501 to 6,024,790
_27925
Position (kb)
6020
6021
6022
6023
6024 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6019.078 kb on + strand, within PS417_27910 at 6019.151 kb on + strand, within PS417_27910 at 6019.215 kb on - strand, within PS417_27910 at 6019.215 kb on - strand, within PS417_27910 at 6019.340 kb on + strand at 6019.341 kb on - strand at 6019.355 kb on + strand at 6019.355 kb on + strand at 6019.356 kb on - strand at 6019.356 kb on - strand at 6019.356 kb on - strand at 6019.356 kb on - strand at 6019.440 kb on + strand, within PS417_27915 at 6019.441 kb on - strand, within PS417_27915 at 6019.507 kb on - strand, within PS417_27915 at 6019.693 kb on + strand, within PS417_27915 at 6019.694 kb on - strand, within PS417_27915 at 6019.853 kb on + strand, within PS417_27915 at 6019.854 kb on - strand, within PS417_27915 at 6019.989 kb on - strand at 6020.240 kb on + strand at 6020.241 kb on - strand at 6020.309 kb on - strand at 6020.533 kb on + strand, within PS417_27920 at 6020.546 kb on - strand, within PS417_27920 at 6020.557 kb on + strand, within PS417_27920 at 6020.557 kb on + strand, within PS417_27920 at 6020.557 kb on + strand, within PS417_27920 at 6020.558 kb on - strand, within PS417_27920 at 6020.558 kb on - strand, within PS417_27920 at 6020.729 kb on + strand, within PS417_27920 at 6020.729 kb on + strand, within PS417_27920 at 6020.730 kb on - strand, within PS417_27920 at 6020.730 kb on - strand, within PS417_27920 at 6020.890 kb on + strand, within PS417_27920 at 6020.890 kb on + strand, within PS417_27920 at 6020.890 kb on + strand, within PS417_27920 at 6020.890 kb on + strand, within PS417_27920 at 6021.284 kb on - strand, within PS417_27920 at 6021.562 kb on + strand, within PS417_27920 at 6021.767 kb on - strand, within PS417_27920 at 6021.767 kb on - strand, within PS417_27920 at 6021.812 kb on - strand, within PS417_27920 at 6022.096 kb on + strand, within PS417_27920 at 6022.096 kb on + strand, within PS417_27920 at 6022.096 kb on + strand, within PS417_27920 at 6022.097 kb on - strand, within PS417_27920 at 6022.097 kb on - strand, within PS417_27920 at 6022.097 kb on - strand, within PS417_27920 at 6022.114 kb on + strand, within PS417_27920 at 6022.273 kb on + strand, within PS417_27920 at 6022.274 kb on - strand, within PS417_27920 at 6022.391 kb on - strand at 6022.498 kb on + strand, within PS417_27920 at 6022.765 kb on + strand, within PS417_27920 at 6022.766 kb on - strand, within PS417_27920 at 6022.766 kb on - strand, within PS417_27920 at 6023.134 kb on + strand, within PS417_27920 at 6023.135 kb on - strand, within PS417_27920 at 6023.135 kb on - strand, within PS417_27920 at 6023.247 kb on - strand at 6023.799 kb on + strand, within PS417_27925 at 6023.906 kb on - strand, within PS417_27925 at 6024.295 kb on - strand, within PS417_27925 at 6024.295 kb on - strand, within PS417_27925 at 6024.313 kb on - strand, within PS417_27925
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 6,019,078 + PS417_27910 0.62 -3.0 6,019,151 + PS417_27910 0.72 +0.2 6,019,215 - PS417_27910 0.81 -2.0 6,019,215 - PS417_27910 0.81 -0.4 6,019,340 + -0.5 6,019,341 - -0.1 6,019,355 + -0.4 6,019,355 + +0.8 6,019,356 - -0.8 6,019,356 - -1.9 6,019,356 - +1.6 6,019,356 - -1.6 6,019,440 + PS417_27915 0.13 -0.2 6,019,441 - PS417_27915 0.13 +0.2 6,019,507 - PS417_27915 0.23 -1.9 6,019,693 + PS417_27915 0.52 -1.0 6,019,694 - PS417_27915 0.52 -0.2 6,019,853 + PS417_27915 0.76 -2.4 6,019,854 - PS417_27915 0.76 -1.2 6,019,989 - +0.8 6,020,240 + -0.0 6,020,241 - -1.4 6,020,309 - -1.3 6,020,533 + PS417_27920 0.15 +1.2 6,020,546 - PS417_27920 0.15 +0.2 6,020,557 + PS417_27920 0.16 +1.2 6,020,557 + PS417_27920 0.16 +0.8 6,020,557 + PS417_27920 0.16 -1.4 6,020,558 - PS417_27920 0.16 +1.0 6,020,558 - PS417_27920 0.16 +0.1 6,020,729 + PS417_27920 0.21 +0.7 6,020,729 + PS417_27920 0.21 -2.1 6,020,730 - PS417_27920 0.21 +0.8 6,020,730 - PS417_27920 0.21 -0.1 6,020,890 + PS417_27920 0.25 -0.7 6,020,890 + PS417_27920 0.25 +1.0 6,020,890 + PS417_27920 0.25 -3.1 6,020,890 + PS417_27920 0.25 +0.9 6,021,284 - PS417_27920 0.37 +0.6 6,021,562 + PS417_27920 0.45 +2.4 6,021,767 - PS417_27920 0.50 +1.0 6,021,767 - PS417_27920 0.50 +0.9 6,021,812 - PS417_27920 0.52 -2.2 6,022,096 + PS417_27920 0.60 +1.4 6,022,096 + PS417_27920 0.60 +1.7 6,022,096 + PS417_27920 0.60 +0.6 6,022,097 - PS417_27920 0.60 +0.4 6,022,097 - PS417_27920 0.60 +0.1 6,022,097 - PS417_27920 0.60 +1.3 6,022,114 + PS417_27920 0.60 -0.7 6,022,273 + PS417_27920 0.65 +0.4 6,022,274 - PS417_27920 0.65 -0.8 6,022,391 - +2.6 6,022,498 + PS417_27920 0.71 -1.0 6,022,765 + PS417_27920 0.79 +1.2 6,022,766 - PS417_27920 0.79 -0.8 6,022,766 - PS417_27920 0.79 +0.3 6,023,134 + PS417_27920 0.89 -1.6 6,023,135 - PS417_27920 0.89 -0.2 6,023,135 - PS417_27920 0.89 +0.7 6,023,247 - -0.4 6,023,799 + PS417_27925 0.23 -0.1 6,023,906 - PS417_27925 0.31 +0.8 6,024,295 - PS417_27925 0.62 -1.7 6,024,295 - PS417_27925 0.62 +3.3 6,024,313 - PS417_27925 0.63 -0.5
Or see this region's nucleotide sequence