Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27865 and PS417_27870 are separated by 8 nucleotides PS417_27870 and PS417_27875 are separated by 127 nucleotides
PS417_27865: PS417_27865 - LysR family transcriptional regulator, at 6,005,939 to 6,006,859
_27865
PS417_27870: PS417_27870 - ATP-dependent DNA helicase RecG, at 6,006,868 to 6,008,943
_27870
PS417_27875: PS417_27875 - histidine kinase, at 6,009,071 to 6,010,471
_27875
Position (kb)
6006
6007
6008
6009 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 6005.938 kb on + strand at 6005.955 kb on + strand at 6005.956 kb on - strand at 6005.956 kb on - strand at 6006.305 kb on + strand, within PS417_27865 at 6006.305 kb on + strand, within PS417_27865 at 6006.306 kb on - strand, within PS417_27865 at 6006.306 kb on - strand, within PS417_27865 at 6006.857 kb on + strand at 6006.857 kb on + strand at 6006.857 kb on + strand at 6007.246 kb on + strand, within PS417_27870 at 6007.247 kb on - strand, within PS417_27870 at 6008.119 kb on - strand, within PS417_27870 at 6008.321 kb on - strand, within PS417_27870 at 6008.383 kb on + strand, within PS417_27870 at 6008.384 kb on - strand, within PS417_27870 at 6008.526 kb on - strand, within PS417_27870 at 6008.831 kb on + strand at 6008.957 kb on - strand at 6008.978 kb on + strand at 6009.007 kb on + strand at 6009.038 kb on + strand at 6009.038 kb on + strand at 6009.039 kb on - strand at 6009.039 kb on - strand at 6009.039 kb on - strand at 6009.039 kb on - strand at 6009.052 kb on + strand at 6009.207 kb on + strand at 6009.208 kb on - strand at 6009.401 kb on + strand, within PS417_27875 at 6009.791 kb on + strand, within PS417_27875 at 6009.791 kb on + strand, within PS417_27875
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 6,005,938 + +1.2 6,005,955 + +0.2 6,005,956 - -1.2 6,005,956 - +1.7 6,006,305 + PS417_27865 0.40 +0.9 6,006,305 + PS417_27865 0.40 -2.0 6,006,306 - PS417_27865 0.40 -3.5 6,006,306 - PS417_27865 0.40 -2.2 6,006,857 + +0.6 6,006,857 + -1.6 6,006,857 + +2.6 6,007,246 + PS417_27870 0.18 -4.5 6,007,247 - PS417_27870 0.18 -3.2 6,008,119 - PS417_27870 0.60 -2.0 6,008,321 - PS417_27870 0.70 -1.5 6,008,383 + PS417_27870 0.73 -2.2 6,008,384 - PS417_27870 0.73 +1.2 6,008,526 - PS417_27870 0.80 +0.7 6,008,831 + -3.6 6,008,957 - -0.0 6,008,978 + -0.8 6,009,007 + -0.6 6,009,038 + +1.3 6,009,038 + +2.8 6,009,039 - +2.7 6,009,039 - +0.9 6,009,039 - +1.8 6,009,039 - +1.7 6,009,052 + -2.4 6,009,207 + +1.3 6,009,208 - +1.8 6,009,401 + PS417_27875 0.24 +2.2 6,009,791 + PS417_27875 0.51 +0.8 6,009,791 + PS417_27875 0.51 +2.4
Or see this region's nucleotide sequence