Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27320 and PS417_27325 overlap by 4 nucleotides PS417_27325 and PS417_27330 overlap by 1 nucleotides
PS417_27320: PS417_27320 - hemolysin secretion protein D, at 5,893,932 to 5,894,897
_27320
PS417_27325: PS417_27325 - multidrug ABC transporter ATP-binding protein, at 5,894,894 to 5,897,611
_27325
PS417_27330: PS417_27330 - membrane protein, at 5,897,611 to 5,898,726
_27330
Position (kb)
5894
5895
5896
5897
5898 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 5894.161 kb on + strand, within PS417_27320 at 5894.162 kb on - strand, within PS417_27320 at 5894.222 kb on - strand, within PS417_27320 at 5894.325 kb on + strand, within PS417_27320 at 5894.326 kb on - strand, within PS417_27320 at 5894.326 kb on - strand, within PS417_27320 at 5894.326 kb on - strand, within PS417_27320 at 5894.419 kb on + strand, within PS417_27320 at 5894.573 kb on - strand, within PS417_27320 at 5894.601 kb on + strand, within PS417_27320 at 5894.601 kb on + strand, within PS417_27320 at 5894.602 kb on - strand, within PS417_27320 at 5894.716 kb on + strand, within PS417_27320 at 5895.174 kb on - strand, within PS417_27325 at 5895.439 kb on - strand, within PS417_27325 at 5895.494 kb on + strand, within PS417_27325 at 5895.495 kb on - strand, within PS417_27325 at 5895.744 kb on + strand, within PS417_27325 at 5895.950 kb on + strand, within PS417_27325 at 5896.005 kb on + strand, within PS417_27325 at 5896.271 kb on - strand, within PS417_27325 at 5896.551 kb on + strand, within PS417_27325 at 5896.551 kb on + strand, within PS417_27325 at 5896.551 kb on + strand, within PS417_27325 at 5896.551 kb on + strand, within PS417_27325 at 5896.552 kb on - strand, within PS417_27325 at 5896.552 kb on - strand, within PS417_27325 at 5896.646 kb on + strand, within PS417_27325 at 5896.646 kb on + strand, within PS417_27325 at 5896.647 kb on - strand, within PS417_27325 at 5896.706 kb on + strand, within PS417_27325 at 5896.707 kb on - strand, within PS417_27325 at 5896.707 kb on - strand, within PS417_27325 at 5896.818 kb on - strand, within PS417_27325 at 5896.888 kb on + strand, within PS417_27325 at 5896.892 kb on + strand, within PS417_27325 at 5896.892 kb on + strand, within PS417_27325 at 5896.892 kb on + strand, within PS417_27325 at 5896.892 kb on + strand, within PS417_27325 at 5896.892 kb on + strand, within PS417_27325 at 5896.892 kb on + strand, within PS417_27325 at 5896.893 kb on - strand, within PS417_27325 at 5896.893 kb on - strand, within PS417_27325 at 5896.893 kb on - strand, within PS417_27325 at 5896.893 kb on - strand, within PS417_27325 at 5896.893 kb on - strand, within PS417_27325 at 5896.893 kb on - strand, within PS417_27325 at 5896.893 kb on - strand, within PS417_27325 at 5896.896 kb on + strand, within PS417_27325 at 5896.896 kb on + strand, within PS417_27325 at 5896.896 kb on + strand, within PS417_27325 at 5896.896 kb on + strand, within PS417_27325 at 5897.177 kb on + strand, within PS417_27325 at 5897.288 kb on + strand, within PS417_27325 at 5897.616 kb on + strand at 5897.616 kb on + strand at 5897.617 kb on - strand at 5897.698 kb on + strand at 5897.698 kb on + strand at 5897.699 kb on - strand at 5897.719 kb on + strand at 5897.719 kb on + strand at 5897.719 kb on + strand at 5897.719 kb on + strand at 5897.719 kb on + strand at 5897.719 kb on + strand at 5897.719 kb on + strand at 5897.719 kb on + strand at 5897.719 kb on + strand at 5897.719 kb on + strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.720 kb on - strand at 5897.721 kb on + strand at 5897.721 kb on + strand at 5897.721 kb on + strand at 5897.722 kb on - strand at 5897.722 kb on - strand at 5897.858 kb on - strand, within PS417_27330 at 5897.858 kb on - strand, within PS417_27330 at 5897.893 kb on + strand, within PS417_27330 at 5897.894 kb on - strand, within PS417_27330 at 5897.972 kb on + strand, within PS417_27330 at 5897.973 kb on - strand, within PS417_27330 at 5898.014 kb on - strand, within PS417_27330 at 5898.049 kb on + strand, within PS417_27330 at 5898.049 kb on + strand, within PS417_27330 at 5898.168 kb on + strand, within PS417_27330 at 5898.168 kb on + strand, within PS417_27330 at 5898.291 kb on + strand, within PS417_27330 at 5898.292 kb on - strand, within PS417_27330 at 5898.292 kb on - strand, within PS417_27330 at 5898.404 kb on - strand, within PS417_27330 at 5898.504 kb on - strand, within PS417_27330 at 5898.504 kb on - strand, within PS417_27330
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,894,161 + PS417_27320 0.24 +0.2 5,894,162 - PS417_27320 0.24 +0.5 5,894,222 - PS417_27320 0.30 +0.6 5,894,325 + PS417_27320 0.41 -1.0 5,894,326 - PS417_27320 0.41 -2.2 5,894,326 - PS417_27320 0.41 +0.2 5,894,326 - PS417_27320 0.41 -0.2 5,894,419 + PS417_27320 0.50 -2.3 5,894,573 - PS417_27320 0.66 +0.8 5,894,601 + PS417_27320 0.69 +0.8 5,894,601 + PS417_27320 0.69 -0.1 5,894,602 - PS417_27320 0.69 +3.6 5,894,716 + PS417_27320 0.81 -1.3 5,895,174 - PS417_27325 0.10 -0.1 5,895,439 - PS417_27325 0.20 +1.2 5,895,494 + PS417_27325 0.22 -0.2 5,895,495 - PS417_27325 0.22 +0.1 5,895,744 + PS417_27325 0.31 -3.9 5,895,950 + PS417_27325 0.39 +1.3 5,896,005 + PS417_27325 0.41 +1.1 5,896,271 - PS417_27325 0.51 -0.1 5,896,551 + PS417_27325 0.61 -0.7 5,896,551 + PS417_27325 0.61 +1.2 5,896,551 + PS417_27325 0.61 +2.6 5,896,551 + PS417_27325 0.61 -1.0 5,896,552 - PS417_27325 0.61 +0.2 5,896,552 - PS417_27325 0.61 -0.3 5,896,646 + PS417_27325 0.64 +1.4 5,896,646 + PS417_27325 0.64 +1.6 5,896,647 - PS417_27325 0.64 -0.6 5,896,706 + PS417_27325 0.67 -1.3 5,896,707 - PS417_27325 0.67 +2.2 5,896,707 - PS417_27325 0.67 -0.3 5,896,818 - PS417_27325 0.71 +1.0 5,896,888 + PS417_27325 0.73 -0.4 5,896,892 + PS417_27325 0.74 -0.6 5,896,892 + PS417_27325 0.74 -2.0 5,896,892 + PS417_27325 0.74 -1.3 5,896,892 + PS417_27325 0.74 -0.6 5,896,892 + PS417_27325 0.74 +1.5 5,896,892 + PS417_27325 0.74 +0.3 5,896,893 - PS417_27325 0.74 +0.6 5,896,893 - PS417_27325 0.74 +0.2 5,896,893 - PS417_27325 0.74 -3.3 5,896,893 - PS417_27325 0.74 -1.5 5,896,893 - PS417_27325 0.74 +0.8 5,896,893 - PS417_27325 0.74 -2.0 5,896,893 - PS417_27325 0.74 -0.2 5,896,896 + PS417_27325 0.74 +1.3 5,896,896 + PS417_27325 0.74 -1.3 5,896,896 + PS417_27325 0.74 +0.2 5,896,896 + PS417_27325 0.74 +0.6 5,897,177 + PS417_27325 0.84 +1.3 5,897,288 + PS417_27325 0.88 -1.8 5,897,616 + +0.3 5,897,616 + +1.0 5,897,617 - -1.0 5,897,698 + +0.2 5,897,698 + -0.9 5,897,699 - +0.2 5,897,719 + +0.5 5,897,719 + -1.3 5,897,719 + -0.8 5,897,719 + +2.2 5,897,719 + -0.8 5,897,719 + -1.8 5,897,719 + +1.3 5,897,719 + -1.6 5,897,719 + -2.4 5,897,719 + +1.5 5,897,720 - +2.3 5,897,720 - -0.7 5,897,720 - +1.0 5,897,720 - -0.4 5,897,720 - +0.5 5,897,720 - -0.1 5,897,720 - -0.2 5,897,720 - +0.8 5,897,720 - +1.8 5,897,720 - +1.7 5,897,720 - -1.4 5,897,721 + +1.2 5,897,721 + -2.3 5,897,721 + -0.4 5,897,722 - -0.1 5,897,722 - -1.6 5,897,858 - PS417_27330 0.22 -0.6 5,897,858 - PS417_27330 0.22 -0.2 5,897,893 + PS417_27330 0.25 -0.1 5,897,894 - PS417_27330 0.25 -1.4 5,897,972 + PS417_27330 0.32 +0.5 5,897,973 - PS417_27330 0.32 +1.8 5,898,014 - PS417_27330 0.36 +0.4 5,898,049 + PS417_27330 0.39 -0.2 5,898,049 + PS417_27330 0.39 -0.9 5,898,168 + PS417_27330 0.50 +1.5 5,898,168 + PS417_27330 0.50 +0.7 5,898,291 + PS417_27330 0.61 +1.2 5,898,292 - PS417_27330 0.61 +1.2 5,898,292 - PS417_27330 0.61 -2.9 5,898,404 - PS417_27330 0.71 -0.8 5,898,504 - PS417_27330 0.80 -0.2 5,898,504 - PS417_27330 0.80 -0.8
Or see this region's nucleotide sequence