Strain Fitness in Pseudomonas simiae WCS417 around PS417_27325

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27320 and PS417_27325 overlap by 4 nucleotidesPS417_27325 and PS417_27330 overlap by 1 nucleotides PS417_27320: PS417_27320 - hemolysin secretion protein D, at 5,893,932 to 5,894,897 _27320 PS417_27325: PS417_27325 - multidrug ABC transporter ATP-binding protein, at 5,894,894 to 5,897,611 _27325 PS417_27330: PS417_27330 - membrane protein, at 5,897,611 to 5,898,726 _27330 Position (kb) 5894 5895 5896 5897 5898Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5894.161 kb on + strand, within PS417_27320at 5894.162 kb on - strand, within PS417_27320at 5894.222 kb on - strand, within PS417_27320at 5894.325 kb on + strand, within PS417_27320at 5894.326 kb on - strand, within PS417_27320at 5894.326 kb on - strand, within PS417_27320at 5894.326 kb on - strand, within PS417_27320at 5894.419 kb on + strand, within PS417_27320at 5894.573 kb on - strand, within PS417_27320at 5894.601 kb on + strand, within PS417_27320at 5894.601 kb on + strand, within PS417_27320at 5894.602 kb on - strand, within PS417_27320at 5894.716 kb on + strand, within PS417_27320at 5895.174 kb on - strand, within PS417_27325at 5895.439 kb on - strand, within PS417_27325at 5895.494 kb on + strand, within PS417_27325at 5895.495 kb on - strand, within PS417_27325at 5895.744 kb on + strand, within PS417_27325at 5895.950 kb on + strand, within PS417_27325at 5896.005 kb on + strand, within PS417_27325at 5896.271 kb on - strand, within PS417_27325at 5896.551 kb on + strand, within PS417_27325at 5896.551 kb on + strand, within PS417_27325at 5896.551 kb on + strand, within PS417_27325at 5896.551 kb on + strand, within PS417_27325at 5896.552 kb on - strand, within PS417_27325at 5896.552 kb on - strand, within PS417_27325at 5896.646 kb on + strand, within PS417_27325at 5896.646 kb on + strand, within PS417_27325at 5896.647 kb on - strand, within PS417_27325at 5896.706 kb on + strand, within PS417_27325at 5896.707 kb on - strand, within PS417_27325at 5896.707 kb on - strand, within PS417_27325at 5896.818 kb on - strand, within PS417_27325at 5896.888 kb on + strand, within PS417_27325at 5896.892 kb on + strand, within PS417_27325at 5896.892 kb on + strand, within PS417_27325at 5896.892 kb on + strand, within PS417_27325at 5896.892 kb on + strand, within PS417_27325at 5896.892 kb on + strand, within PS417_27325at 5896.892 kb on + strand, within PS417_27325at 5896.893 kb on - strand, within PS417_27325at 5896.893 kb on - strand, within PS417_27325at 5896.893 kb on - strand, within PS417_27325at 5896.893 kb on - strand, within PS417_27325at 5896.893 kb on - strand, within PS417_27325at 5896.893 kb on - strand, within PS417_27325at 5896.893 kb on - strand, within PS417_27325at 5896.896 kb on + strand, within PS417_27325at 5896.896 kb on + strand, within PS417_27325at 5896.896 kb on + strand, within PS417_27325at 5896.896 kb on + strand, within PS417_27325at 5897.177 kb on + strand, within PS417_27325at 5897.288 kb on + strand, within PS417_27325at 5897.616 kb on + strandat 5897.616 kb on + strandat 5897.617 kb on - strandat 5897.698 kb on + strandat 5897.698 kb on + strandat 5897.699 kb on - strandat 5897.719 kb on + strandat 5897.719 kb on + strandat 5897.719 kb on + strandat 5897.719 kb on + strandat 5897.719 kb on + strandat 5897.719 kb on + strandat 5897.719 kb on + strandat 5897.719 kb on + strandat 5897.719 kb on + strandat 5897.719 kb on + strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.720 kb on - strandat 5897.721 kb on + strandat 5897.721 kb on + strandat 5897.721 kb on + strandat 5897.722 kb on - strandat 5897.722 kb on - strandat 5897.858 kb on - strand, within PS417_27330at 5897.858 kb on - strand, within PS417_27330at 5897.893 kb on + strand, within PS417_27330at 5897.894 kb on - strand, within PS417_27330at 5897.972 kb on + strand, within PS417_27330at 5897.973 kb on - strand, within PS417_27330at 5898.014 kb on - strand, within PS417_27330at 5898.049 kb on + strand, within PS417_27330at 5898.049 kb on + strand, within PS417_27330at 5898.168 kb on + strand, within PS417_27330at 5898.168 kb on + strand, within PS417_27330at 5898.291 kb on + strand, within PS417_27330at 5898.292 kb on - strand, within PS417_27330at 5898.292 kb on - strand, within PS417_27330at 5898.404 kb on - strand, within PS417_27330at 5898.504 kb on - strand, within PS417_27330at 5898.504 kb on - strand, within PS417_27330

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,894,161 + PS417_27320 0.24 +0.2
5,894,162 - PS417_27320 0.24 +0.5
5,894,222 - PS417_27320 0.30 +0.6
5,894,325 + PS417_27320 0.41 -1.0
5,894,326 - PS417_27320 0.41 -2.2
5,894,326 - PS417_27320 0.41 +0.2
5,894,326 - PS417_27320 0.41 -0.2
5,894,419 + PS417_27320 0.50 -2.3
5,894,573 - PS417_27320 0.66 +0.8
5,894,601 + PS417_27320 0.69 +0.8
5,894,601 + PS417_27320 0.69 -0.1
5,894,602 - PS417_27320 0.69 +3.6
5,894,716 + PS417_27320 0.81 -1.3
5,895,174 - PS417_27325 0.10 -0.1
5,895,439 - PS417_27325 0.20 +1.2
5,895,494 + PS417_27325 0.22 -0.2
5,895,495 - PS417_27325 0.22 +0.1
5,895,744 + PS417_27325 0.31 -3.9
5,895,950 + PS417_27325 0.39 +1.3
5,896,005 + PS417_27325 0.41 +1.1
5,896,271 - PS417_27325 0.51 -0.1
5,896,551 + PS417_27325 0.61 -0.7
5,896,551 + PS417_27325 0.61 +1.2
5,896,551 + PS417_27325 0.61 +2.6
5,896,551 + PS417_27325 0.61 -1.0
5,896,552 - PS417_27325 0.61 +0.2
5,896,552 - PS417_27325 0.61 -0.3
5,896,646 + PS417_27325 0.64 +1.4
5,896,646 + PS417_27325 0.64 +1.6
5,896,647 - PS417_27325 0.64 -0.6
5,896,706 + PS417_27325 0.67 -1.3
5,896,707 - PS417_27325 0.67 +2.2
5,896,707 - PS417_27325 0.67 -0.3
5,896,818 - PS417_27325 0.71 +1.0
5,896,888 + PS417_27325 0.73 -0.4
5,896,892 + PS417_27325 0.74 -0.6
5,896,892 + PS417_27325 0.74 -2.0
5,896,892 + PS417_27325 0.74 -1.3
5,896,892 + PS417_27325 0.74 -0.6
5,896,892 + PS417_27325 0.74 +1.5
5,896,892 + PS417_27325 0.74 +0.3
5,896,893 - PS417_27325 0.74 +0.6
5,896,893 - PS417_27325 0.74 +0.2
5,896,893 - PS417_27325 0.74 -3.3
5,896,893 - PS417_27325 0.74 -1.5
5,896,893 - PS417_27325 0.74 +0.8
5,896,893 - PS417_27325 0.74 -2.0
5,896,893 - PS417_27325 0.74 -0.2
5,896,896 + PS417_27325 0.74 +1.3
5,896,896 + PS417_27325 0.74 -1.3
5,896,896 + PS417_27325 0.74 +0.2
5,896,896 + PS417_27325 0.74 +0.6
5,897,177 + PS417_27325 0.84 +1.3
5,897,288 + PS417_27325 0.88 -1.8
5,897,616 + +0.3
5,897,616 + +1.0
5,897,617 - -1.0
5,897,698 + +0.2
5,897,698 + -0.9
5,897,699 - +0.2
5,897,719 + +0.5
5,897,719 + -1.3
5,897,719 + -0.8
5,897,719 + +2.2
5,897,719 + -0.8
5,897,719 + -1.8
5,897,719 + +1.3
5,897,719 + -1.6
5,897,719 + -2.4
5,897,719 + +1.5
5,897,720 - +2.3
5,897,720 - -0.7
5,897,720 - +1.0
5,897,720 - -0.4
5,897,720 - +0.5
5,897,720 - -0.1
5,897,720 - -0.2
5,897,720 - +0.8
5,897,720 - +1.8
5,897,720 - +1.7
5,897,720 - -1.4
5,897,721 + +1.2
5,897,721 + -2.3
5,897,721 + -0.4
5,897,722 - -0.1
5,897,722 - -1.6
5,897,858 - PS417_27330 0.22 -0.6
5,897,858 - PS417_27330 0.22 -0.2
5,897,893 + PS417_27330 0.25 -0.1
5,897,894 - PS417_27330 0.25 -1.4
5,897,972 + PS417_27330 0.32 +0.5
5,897,973 - PS417_27330 0.32 +1.8
5,898,014 - PS417_27330 0.36 +0.4
5,898,049 + PS417_27330 0.39 -0.2
5,898,049 + PS417_27330 0.39 -0.9
5,898,168 + PS417_27330 0.50 +1.5
5,898,168 + PS417_27330 0.50 +0.7
5,898,291 + PS417_27330 0.61 +1.2
5,898,292 - PS417_27330 0.61 +1.2
5,898,292 - PS417_27330 0.61 -2.9
5,898,404 - PS417_27330 0.71 -0.8
5,898,504 - PS417_27330 0.80 -0.2
5,898,504 - PS417_27330 0.80 -0.8

Or see this region's nucleotide sequence