Strain Fitness in Pseudomonas simiae WCS417 around PS417_02655

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02650 and PS417_02655 are separated by 374 nucleotidesPS417_02655 and PS417_02660 are separated by 231 nucleotides PS417_02650: PS417_02650 - FAD-dependent oxidoreductase, at 606,246 to 607,529 _02650 PS417_02655: PS417_02655 - amino acid ABC transporter substrate-binding protein, at 607,904 to 609,040 _02655 PS417_02660: PS417_02660 - branched-chain amino acid transporter permease subunit LivH, at 609,272 to 610,186 _02660 Position (kb) 607 608 609 610Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 606.958 kb on - strand, within PS417_02650at 607.009 kb on - strand, within PS417_02650at 607.009 kb on - strand, within PS417_02650at 607.011 kb on + strand, within PS417_02650at 607.012 kb on - strand, within PS417_02650at 607.212 kb on + strand, within PS417_02650at 607.212 kb on + strand, within PS417_02650at 607.213 kb on - strand, within PS417_02650at 607.245 kb on + strand, within PS417_02650at 607.386 kb on + strand, within PS417_02650at 607.386 kb on + strandat 607.390 kb on + strand, within PS417_02650at 607.390 kb on + strand, within PS417_02650at 607.391 kb on - strand, within PS417_02650at 607.391 kb on - strand, within PS417_02650at 607.391 kb on - strand, within PS417_02650at 607.463 kb on + strandat 607.464 kb on - strandat 607.473 kb on + strandat 607.495 kb on - strandat 607.666 kb on + strandat 607.667 kb on - strandat 607.728 kb on + strandat 607.735 kb on + strandat 607.779 kb on + strandat 607.919 kb on + strandat 608.045 kb on + strand, within PS417_02655at 608.045 kb on + strand, within PS417_02655at 608.046 kb on - strand, within PS417_02655at 608.046 kb on - strand, within PS417_02655at 608.249 kb on + strand, within PS417_02655at 608.249 kb on + strand, within PS417_02655at 608.249 kb on + strand, within PS417_02655at 608.250 kb on - strand, within PS417_02655at 608.332 kb on + strandat 608.332 kb on + strand, within PS417_02655at 608.333 kb on - strand, within PS417_02655at 608.375 kb on + strand, within PS417_02655at 608.433 kb on - strand, within PS417_02655at 608.576 kb on + strand, within PS417_02655at 608.577 kb on - strand, within PS417_02655at 608.577 kb on - strand, within PS417_02655at 608.670 kb on + strand, within PS417_02655at 608.671 kb on - strand, within PS417_02655at 608.726 kb on + strand, within PS417_02655at 608.726 kb on + strand, within PS417_02655at 608.727 kb on - strand, within PS417_02655at 608.727 kb on - strand, within PS417_02655at 608.817 kb on - strand, within PS417_02655at 608.826 kb on - strand, within PS417_02655at 608.826 kb on - strand, within PS417_02655at 608.826 kb on - strand, within PS417_02655at 608.982 kb on - strandat 608.990 kb on + strandat 608.991 kb on - strandat 609.015 kb on - strandat 609.038 kb on + strandat 609.039 kb on - strandat 609.039 kb on - strandat 609.044 kb on + strandat 609.127 kb on - strandat 609.139 kb on - strandat 609.139 kb on - strandat 609.139 kb on - strandat 609.202 kb on + strandat 609.280 kb on + strandat 609.281 kb on - strandat 609.281 kb on - strandat 609.360 kb on - strandat 609.401 kb on + strand, within PS417_02660at 609.401 kb on + strand, within PS417_02660at 609.402 kb on - strand, within PS417_02660at 609.402 kb on - strand, within PS417_02660at 609.403 kb on + strand, within PS417_02660at 609.403 kb on + strandat 609.404 kb on - strand, within PS417_02660at 609.404 kb on - strand, within PS417_02660at 609.450 kb on - strand, within PS417_02660at 609.450 kb on - strand, within PS417_02660at 609.658 kb on + strand, within PS417_02660at 609.659 kb on - strand, within PS417_02660at 609.722 kb on + strand, within PS417_02660at 609.723 kb on - strand, within PS417_02660at 609.723 kb on - strand, within PS417_02660at 609.724 kb on + strand, within PS417_02660at 609.724 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.788 kb on + strand, within PS417_02660at 609.879 kb on - strand, within PS417_02660at 609.879 kb on - strand, within PS417_02660at 609.879 kb on - strand, within PS417_02660at 609.938 kb on + strand, within PS417_02660

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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606,958 - PS417_02650 0.55 -0.6
607,009 - PS417_02650 0.59 +0.8
607,009 - PS417_02650 0.59 -0.2
607,011 + PS417_02650 0.60 +0.5
607,012 - PS417_02650 0.60 +0.1
607,212 + PS417_02650 0.75 +1.7
607,212 + PS417_02650 0.75 +0.4
607,213 - PS417_02650 0.75 -1.8
607,245 + PS417_02650 0.78 -0.9
607,386 + PS417_02650 0.89 +1.4
607,386 + +0.1
607,390 + PS417_02650 0.89 +0.4
607,390 + PS417_02650 0.89 -0.4
607,391 - PS417_02650 0.89 +0.8
607,391 - PS417_02650 0.89 -2.6
607,391 - PS417_02650 0.89 +1.3
607,463 + -0.3
607,464 - -2.4
607,473 + +1.5
607,495 - -1.1
607,666 + -0.2
607,667 - -0.3
607,728 + -0.1
607,735 + +0.2
607,779 + +0.6
607,919 + -2.6
608,045 + PS417_02655 0.12 -2.5
608,045 + PS417_02655 0.12 -1.9
608,046 - PS417_02655 0.12 -2.4
608,046 - PS417_02655 0.12 -3.5
608,249 + PS417_02655 0.30 -1.2
608,249 + PS417_02655 0.30 -5.9
608,249 + PS417_02655 0.30 -1.8
608,250 - PS417_02655 0.30 -4.1
608,332 + -0.4
608,332 + PS417_02655 0.38 -2.2
608,333 - PS417_02655 0.38 -2.1
608,375 + PS417_02655 0.41 -2.9
608,433 - PS417_02655 0.47 -1.6
608,576 + PS417_02655 0.59 -0.8
608,577 - PS417_02655 0.59 -2.3
608,577 - PS417_02655 0.59 -4.7
608,670 + PS417_02655 0.67 -4.1
608,671 - PS417_02655 0.67 -2.6
608,726 + PS417_02655 0.72 -2.0
608,726 + PS417_02655 0.72 -4.3
608,727 - PS417_02655 0.72 -1.6
608,727 - PS417_02655 0.72 -4.6
608,817 - PS417_02655 0.80 -4.4
608,826 - PS417_02655 0.81 -3.1
608,826 - PS417_02655 0.81 -3.9
608,826 - PS417_02655 0.81 -3.2
608,982 - -5.0
608,990 + -2.4
608,991 - -3.9
609,015 - -3.0
609,038 + -1.7
609,039 - -1.9
609,039 - -2.0
609,044 + -2.8
609,127 - +1.1
609,139 - -1.9
609,139 - +0.7
609,139 - -1.4
609,202 + -2.2
609,280 + -3.3
609,281 - -3.7
609,281 - -0.2
609,360 - -0.2
609,401 + PS417_02660 0.14 -1.6
609,401 + PS417_02660 0.14 -1.2
609,402 - PS417_02660 0.14 -3.9
609,402 - PS417_02660 0.14 -3.0
609,403 + PS417_02660 0.14 +0.7
609,403 + -1.8
609,404 - PS417_02660 0.14 -3.3
609,404 - PS417_02660 0.14 -2.9
609,450 - PS417_02660 0.19 -3.5
609,450 - PS417_02660 0.19 -3.2
609,658 + PS417_02660 0.42 -3.2
609,659 - PS417_02660 0.42 -3.3
609,722 + PS417_02660 0.49 -2.8
609,723 - PS417_02660 0.49 -3.3
609,723 - PS417_02660 0.49 -2.3
609,724 + PS417_02660 0.49 -1.7
609,724 + PS417_02660 0.49 -2.5
609,776 + PS417_02660 0.55 -1.8
609,776 + PS417_02660 0.55 -1.3
609,776 + PS417_02660 0.55 -3.4
609,776 + PS417_02660 0.55 -2.3
609,777 - PS417_02660 0.55 -4.1
609,777 - PS417_02660 0.55 -2.1
609,777 - PS417_02660 0.55 -3.6
609,777 - PS417_02660 0.55 -0.7
609,777 - PS417_02660 0.55 -4.3
609,777 - PS417_02660 0.55 -2.6
609,777 - PS417_02660 0.55 -1.6
609,788 + PS417_02660 0.56 -2.8
609,879 - PS417_02660 0.66 -2.3
609,879 - PS417_02660 0.66 -0.9
609,879 - PS417_02660 0.66 -1.5
609,938 + PS417_02660 0.73 -3.4

Or see this region's nucleotide sequence