Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26240 and PS417_26245 are separated by 15 nucleotides PS417_26245 and PS417_26250 are separated by 78 nucleotides PS417_26250 and PS417_26255 are separated by 219 nucleotides PS417_26255 and PS417_26260 are separated by 41 nucleotides
PS417_26240: PS417_26240 - N-methylproline demethylase, at 5,672,169 to 5,674,229
_26240
PS417_26245: PS417_26245 - hypothetical protein, at 5,674,245 to 5,674,775
_26245
PS417_26250: PS417_26250 - peptidase M19, at 5,674,854 to 5,675,831
_26250
PS417_26255: PS417_26255 - hypothetical protein, at 5,676,051 to 5,676,452
_26255
PS417_26260: PS417_26260 - hypothetical protein, at 5,676,494 to 5,676,910
_26260
Position (kb) 5674
5675
5676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5674.096 kb on + strand at 5674.096 kb on + strand at 5674.096 kb on + strand at 5674.099 kb on + strand at 5674.109 kb on - strand at 5674.142 kb on - strand at 5674.247 kb on - strand at 5674.301 kb on - strand, within PS417_26245 at 5674.301 kb on - strand, within PS417_26245 at 5674.387 kb on + strand, within PS417_26245 at 5674.388 kb on - strand, within PS417_26245 at 5674.388 kb on - strand, within PS417_26245 at 5674.612 kb on + strand, within PS417_26245 at 5674.612 kb on + strand, within PS417_26245 at 5674.612 kb on + strand, within PS417_26245 at 5674.613 kb on - strand, within PS417_26245 at 5674.613 kb on - strand, within PS417_26245 at 5674.613 kb on - strand, within PS417_26245 at 5674.628 kb on - strand, within PS417_26245 at 5674.668 kb on - strand, within PS417_26245 at 5674.783 kb on + strand at 5674.784 kb on - strand at 5674.856 kb on - strand at 5675.131 kb on + strand, within PS417_26250 at 5675.131 kb on + strand, within PS417_26250 at 5675.132 kb on - strand, within PS417_26250 at 5675.352 kb on + strand, within PS417_26250 at 5675.353 kb on - strand, within PS417_26250 at 5675.353 kb on - strand, within PS417_26250 at 5675.474 kb on - strand, within PS417_26250 at 5675.894 kb on - strand at 5675.894 kb on - strand at 5675.894 kb on - strand at 5675.894 kb on - strand at 5676.037 kb on + strand at 5676.171 kb on + strand, within PS417_26255 at 5676.171 kb on + strand at 5676.172 kb on - strand, within PS417_26255 at 5676.206 kb on + strand, within PS417_26255 at 5676.207 kb on - strand, within PS417_26255 at 5676.207 kb on - strand, within PS417_26255 at 5676.210 kb on + strand, within PS417_26255 at 5676.210 kb on + strand, within PS417_26255 at 5676.211 kb on - strand, within PS417_26255 at 5676.211 kb on - strand, within PS417_26255 at 5676.243 kb on + strand, within PS417_26255 at 5676.243 kb on + strand, within PS417_26255 at 5676.244 kb on - strand, within PS417_26255 at 5676.450 kb on + strand at 5676.450 kb on + strand at 5676.451 kb on - strand at 5676.490 kb on - strand at 5676.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,674,096 + +0.5 5,674,096 + +1.5 5,674,096 + -0.9 5,674,099 + -1.0 5,674,109 - -1.1 5,674,142 - -0.1 5,674,247 - +0.3 5,674,301 - PS417_26245 0.11 +3.1 5,674,301 - PS417_26245 0.11 +1.5 5,674,387 + PS417_26245 0.27 -2.3 5,674,388 - PS417_26245 0.27 +0.5 5,674,388 - PS417_26245 0.27 +0.5 5,674,612 + PS417_26245 0.69 -2.2 5,674,612 + PS417_26245 0.69 +1.4 5,674,612 + PS417_26245 0.69 -2.3 5,674,613 - PS417_26245 0.69 +0.4 5,674,613 - PS417_26245 0.69 +0.1 5,674,613 - PS417_26245 0.69 +2.2 5,674,628 - PS417_26245 0.72 +1.4 5,674,668 - PS417_26245 0.80 -0.1 5,674,783 + -3.3 5,674,784 - -0.5 5,674,856 - +0.0 5,675,131 + PS417_26250 0.28 -0.3 5,675,131 + PS417_26250 0.28 -2.9 5,675,132 - PS417_26250 0.28 -0.5 5,675,352 + PS417_26250 0.51 -3.7 5,675,353 - PS417_26250 0.51 -0.2 5,675,353 - PS417_26250 0.51 +0.1 5,675,474 - PS417_26250 0.63 +0.0 5,675,894 - +1.2 5,675,894 - +0.3 5,675,894 - -0.7 5,675,894 - +1.6 5,676,037 + +0.6 5,676,171 + PS417_26255 0.30 -1.6 5,676,171 + -1.3 5,676,172 - PS417_26255 0.30 +2.5 5,676,206 + PS417_26255 0.39 +1.4 5,676,207 - PS417_26255 0.39 +1.9 5,676,207 - PS417_26255 0.39 -0.1 5,676,210 + PS417_26255 0.40 +3.6 5,676,210 + PS417_26255 0.40 +0.1 5,676,211 - PS417_26255 0.40 +0.9 5,676,211 - PS417_26255 0.40 -0.6 5,676,243 + PS417_26255 0.48 -0.6 5,676,243 + PS417_26255 0.48 +3.8 5,676,244 - PS417_26255 0.48 +2.0 5,676,450 + +2.3 5,676,450 + +0.6 5,676,451 - +0.3 5,676,490 - -0.3 5,676,490 - +1.3
Or see this region's nucleotide sequence