Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25340 and PS417_25345 are separated by 4 nucleotides PS417_25345 and PS417_25350 overlap by 11 nucleotides PS417_25350 and PS417_25355 are separated by 171 nucleotides
PS417_25340: PS417_25340 - membrane protein, at 5,486,967 to 5,487,914
_25340
PS417_25345: PS417_25345 - permease, at 5,487,919 to 5,488,674
_25345
PS417_25350: PS417_25350 - biotin carboxylase, at 5,488,664 to 5,489,773
_25350
PS417_25355: PS417_25355 - AraC family transcriptional regulator, at 5,489,945 to 5,490,904
_25355
Position (kb) 5488
5489
5490 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5487.752 kb on + strand, within PS417_25340 at 5487.790 kb on + strand, within PS417_25340 at 5487.790 kb on + strand, within PS417_25340 at 5487.791 kb on - strand, within PS417_25340 at 5487.822 kb on + strand at 5487.823 kb on - strand at 5487.823 kb on - strand at 5487.823 kb on - strand at 5487.828 kb on - strand at 5487.828 kb on - strand at 5487.828 kb on - strand at 5487.858 kb on + strand at 5487.858 kb on + strand at 5487.858 kb on + strand at 5487.859 kb on - strand at 5487.859 kb on - strand at 5487.859 kb on - strand at 5487.859 kb on - strand at 5487.920 kb on + strand at 5487.993 kb on - strand at 5488.085 kb on + strand at 5488.665 kb on + strand at 5488.665 kb on + strand at 5488.666 kb on - strand at 5488.692 kb on + strand at 5488.693 kb on - strand at 5488.693 kb on - strand at 5488.770 kb on + strand at 5488.770 kb on + strand at 5488.771 kb on - strand at 5488.771 kb on - strand at 5488.771 kb on - strand at 5488.932 kb on + strand, within PS417_25350 at 5488.933 kb on - strand, within PS417_25350 at 5488.933 kb on - strand, within PS417_25350 at 5488.933 kb on - strand, within PS417_25350 at 5488.950 kb on + strand, within PS417_25350 at 5488.950 kb on + strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.962 kb on + strand, within PS417_25350 at 5489.015 kb on + strand, within PS417_25350 at 5489.039 kb on + strand, within PS417_25350 at 5489.040 kb on - strand, within PS417_25350 at 5489.052 kb on + strand, within PS417_25350 at 5489.052 kb on + strand, within PS417_25350 at 5489.053 kb on - strand, within PS417_25350 at 5489.122 kb on - strand, within PS417_25350 at 5489.122 kb on - strand, within PS417_25350 at 5489.148 kb on + strand, within PS417_25350 at 5489.149 kb on - strand, within PS417_25350 at 5489.343 kb on + strand, within PS417_25350 at 5489.344 kb on - strand, within PS417_25350 at 5489.604 kb on + strand, within PS417_25350 at 5489.604 kb on + strand, within PS417_25350 at 5489.637 kb on + strand, within PS417_25350 at 5489.637 kb on + strand, within PS417_25350 at 5489.638 kb on - strand, within PS417_25350 at 5489.745 kb on - strand at 5489.804 kb on + strand at 5489.804 kb on + strand at 5489.804 kb on + strand at 5489.804 kb on + strand at 5489.805 kb on - strand at 5489.805 kb on - strand at 5489.805 kb on - strand at 5489.806 kb on + strand at 5489.806 kb on + strand at 5490.117 kb on + strand, within PS417_25355 at 5490.529 kb on + strand, within PS417_25355 at 5490.529 kb on + strand, within PS417_25355 at 5490.530 kb on - strand, within PS417_25355
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,487,752 + PS417_25340 0.83 +0.9 5,487,790 + PS417_25340 0.87 +2.1 5,487,790 + PS417_25340 0.87 -2.0 5,487,791 - PS417_25340 0.87 +0.3 5,487,822 + -0.5 5,487,823 - -1.3 5,487,823 - +0.0 5,487,823 - -2.1 5,487,828 - -0.7 5,487,828 - -0.2 5,487,828 - -0.4 5,487,858 + +0.4 5,487,858 + -3.0 5,487,858 + -0.3 5,487,859 - -0.1 5,487,859 - -0.8 5,487,859 - +1.2 5,487,859 - -0.4 5,487,920 + -0.6 5,487,993 - -0.9 5,488,085 + -0.5 5,488,665 + -2.0 5,488,665 + +1.4 5,488,666 - -0.5 5,488,692 + -2.7 5,488,693 - +0.2 5,488,693 - +0.3 5,488,770 + -3.3 5,488,770 + -1.4 5,488,771 - -0.4 5,488,771 - +0.4 5,488,771 - +0.1 5,488,932 + PS417_25350 0.24 -0.1 5,488,933 - PS417_25350 0.24 +0.1 5,488,933 - PS417_25350 0.24 +1.1 5,488,933 - PS417_25350 0.24 -1.0 5,488,950 + PS417_25350 0.26 +0.2 5,488,950 + PS417_25350 0.26 +1.5 5,488,951 - PS417_25350 0.26 -1.3 5,488,951 - PS417_25350 0.26 +1.0 5,488,951 - PS417_25350 0.26 +2.6 5,488,951 - PS417_25350 0.26 +1.0 5,488,962 + PS417_25350 0.27 -2.0 5,489,015 + PS417_25350 0.32 -1.9 5,489,039 + PS417_25350 0.34 -0.4 5,489,040 - PS417_25350 0.34 -0.5 5,489,052 + PS417_25350 0.35 -2.3 5,489,052 + PS417_25350 0.35 -0.9 5,489,053 - PS417_25350 0.35 +2.1 5,489,122 - PS417_25350 0.41 +0.6 5,489,122 - PS417_25350 0.41 +0.2 5,489,148 + PS417_25350 0.44 -0.5 5,489,149 - PS417_25350 0.44 -0.2 5,489,343 + PS417_25350 0.61 +1.6 5,489,344 - PS417_25350 0.61 +0.3 5,489,604 + PS417_25350 0.85 +2.2 5,489,604 + PS417_25350 0.85 -2.1 5,489,637 + PS417_25350 0.88 +0.7 5,489,637 + PS417_25350 0.88 -0.9 5,489,638 - PS417_25350 0.88 +0.3 5,489,745 - +0.1 5,489,804 + +0.2 5,489,804 + -1.3 5,489,804 + +0.0 5,489,804 + -0.8 5,489,805 - -1.9 5,489,805 - -0.5 5,489,805 - -2.2 5,489,806 + -0.6 5,489,806 + +1.3 5,490,117 + PS417_25355 0.18 -0.2 5,490,529 + PS417_25355 0.61 +0.2 5,490,529 + PS417_25355 0.61 +0.4 5,490,530 - PS417_25355 0.61 -1.0
Or see this region's nucleotide sequence