Strain Fitness in Pseudomonas simiae WCS417 around PS417_25080

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25070 and PS417_25075 overlap by 16 nucleotidesPS417_25075 and PS417_25080 are separated by 74 nucleotidesPS417_25080 and PS417_25085 are separated by 68 nucleotides PS417_25070: PS417_25070 - hypothetical protein, at 5,436,585 to 5,437,670 _25070 PS417_25075: PS417_25075 - hypothetical protein, at 5,437,655 to 5,438,221 _25075 PS417_25080: PS417_25080 - hypothetical protein, at 5,438,296 to 5,439,393 _25080 PS417_25085: PS417_25085 - hypothetical protein, at 5,439,462 to 5,440,670 _25085 Position (kb) 5438 5439 5440Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5437.300 kb on - strand, within PS417_25070at 5437.300 kb on - strand, within PS417_25070at 5437.345 kb on + strandat 5437.346 kb on - strand, within PS417_25070at 5437.379 kb on + strandat 5437.380 kb on - strand, within PS417_25070at 5437.401 kb on + strand, within PS417_25070at 5437.445 kb on - strand, within PS417_25070at 5437.504 kb on - strand, within PS417_25070at 5437.504 kb on - strand, within PS417_25070at 5437.548 kb on + strand, within PS417_25070at 5437.650 kb on + strandat 5437.656 kb on + strandat 5437.656 kb on + strandat 5437.657 kb on - strandat 5437.739 kb on + strand, within PS417_25075at 5437.739 kb on + strandat 5437.740 kb on - strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.754 kb on + strand, within PS417_25075at 5437.855 kb on + strand, within PS417_25075at 5437.856 kb on - strand, within PS417_25075at 5437.856 kb on - strand, within PS417_25075at 5437.856 kb on - strand, within PS417_25075at 5438.017 kb on - strandat 5438.221 kb on + strandat 5438.221 kb on + strandat 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.493 kb on - strand, within PS417_25080at 5438.573 kb on - strand, within PS417_25080at 5438.573 kb on - strand, within PS417_25080at 5438.710 kb on - strand, within PS417_25080at 5438.734 kb on + strand, within PS417_25080at 5438.782 kb on + strand, within PS417_25080at 5438.788 kb on + strand, within PS417_25080at 5438.788 kb on + strand, within PS417_25080at 5438.788 kb on + strand, within PS417_25080at 5438.789 kb on - strand, within PS417_25080at 5438.790 kb on + strand, within PS417_25080at 5438.798 kb on - strand, within PS417_25080at 5438.901 kb on - strand, within PS417_25080at 5439.022 kb on + strand, within PS417_25080at 5439.023 kb on - strand, within PS417_25080at 5439.249 kb on - strand, within PS417_25080at 5439.257 kb on + strand, within PS417_25080at 5439.258 kb on - strand, within PS417_25080at 5439.298 kb on - strandat 5439.298 kb on - strandat 5439.356 kb on + strandat 5439.357 kb on - strandat 5439.357 kb on - strandat 5439.488 kb on - strandat 5439.657 kb on - strand, within PS417_25085at 5439.667 kb on + strand, within PS417_25085at 5439.667 kb on + strand, within PS417_25085at 5439.667 kb on + strandat 5439.668 kb on - strand, within PS417_25085at 5439.668 kb on - strand, within PS417_25085at 5439.668 kb on - strand, within PS417_25085at 5439.668 kb on - strand, within PS417_25085at 5439.668 kb on - strand, within PS417_25085at 5439.718 kb on + strand, within PS417_25085at 5439.719 kb on - strand, within PS417_25085at 5439.778 kb on + strand, within PS417_25085at 5439.778 kb on + strand, within PS417_25085at 5439.819 kb on + strand, within PS417_25085at 5439.819 kb on + strand, within PS417_25085at 5439.885 kb on + strand, within PS417_25085at 5439.937 kb on + strand, within PS417_25085at 5439.959 kb on + strand, within PS417_25085at 5439.960 kb on - strand, within PS417_25085at 5439.960 kb on - strand, within PS417_25085at 5439.960 kb on - strand, within PS417_25085at 5440.012 kb on + strand, within PS417_25085at 5440.106 kb on + strand, within PS417_25085at 5440.131 kb on + strand, within PS417_25085at 5440.132 kb on - strand, within PS417_25085at 5440.132 kb on - strand, within PS417_25085at 5440.132 kb on - strand, within PS417_25085at 5440.132 kb on - strand, within PS417_25085at 5440.205 kb on - strand, within PS417_25085at 5440.214 kb on - strand, within PS417_25085at 5440.229 kb on + strand, within PS417_25085at 5440.229 kb on + strand, within PS417_25085at 5440.377 kb on + strand, within PS417_25085

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,437,300 - PS417_25070 0.66 -0.3
5,437,300 - PS417_25070 0.66 -0.8
5,437,345 + -0.5
5,437,346 - PS417_25070 0.70 -0.7
5,437,379 + +1.6
5,437,380 - PS417_25070 0.73 +3.5
5,437,401 + PS417_25070 0.75 -0.3
5,437,445 - PS417_25070 0.79 +0.8
5,437,504 - PS417_25070 0.85 -0.5
5,437,504 - PS417_25070 0.85 -2.1
5,437,548 + PS417_25070 0.89 +0.8
5,437,650 + -0.1
5,437,656 + +0.7
5,437,656 + -0.8
5,437,657 - -1.0
5,437,739 + PS417_25075 0.15 -1.5
5,437,739 + +4.0
5,437,740 - PS417_25075 0.15 +0.4
5,437,741 + PS417_25075 0.15 -3.0
5,437,741 + PS417_25075 0.15 +0.4
5,437,741 + PS417_25075 0.15 -0.7
5,437,741 + PS417_25075 0.15 -2.1
5,437,742 - PS417_25075 0.15 +0.1
5,437,742 - PS417_25075 0.15 +0.0
5,437,742 - PS417_25075 0.15 +0.0
5,437,742 - PS417_25075 0.15 +2.4
5,437,742 - PS417_25075 0.15 -0.7
5,437,742 - PS417_25075 0.15 -3.0
5,437,742 - PS417_25075 0.15 +1.2
5,437,754 + PS417_25075 0.17 -2.9
5,437,855 + PS417_25075 0.35 -0.2
5,437,856 - PS417_25075 0.35 +1.3
5,437,856 - PS417_25075 0.35 +0.0
5,437,856 - PS417_25075 0.35 -0.3
5,438,017 - +0.5
5,438,221 + -0.7
5,438,221 + +1.1
5,438,492 + PS417_25080 0.18 +1.1
5,438,492 + PS417_25080 0.18 -0.8
5,438,492 + PS417_25080 0.18 -3.6
5,438,492 + PS417_25080 0.18 -0.3
5,438,493 - PS417_25080 0.18 -2.9
5,438,573 - PS417_25080 0.25 -1.7
5,438,573 - PS417_25080 0.25 -2.2
5,438,710 - PS417_25080 0.38 -0.7
5,438,734 + PS417_25080 0.40 -0.9
5,438,782 + PS417_25080 0.44 +0.3
5,438,788 + PS417_25080 0.45 -1.2
5,438,788 + PS417_25080 0.45 -0.2
5,438,788 + PS417_25080 0.45 -0.3
5,438,789 - PS417_25080 0.45 -0.1
5,438,790 + PS417_25080 0.45 -0.1
5,438,798 - PS417_25080 0.46 -1.5
5,438,901 - PS417_25080 0.55 -1.1
5,439,022 + PS417_25080 0.66 +1.3
5,439,023 - PS417_25080 0.66 +0.0
5,439,249 - PS417_25080 0.87 -0.1
5,439,257 + PS417_25080 0.88 -0.2
5,439,258 - PS417_25080 0.88 -2.4
5,439,298 - +0.8
5,439,298 - +0.1
5,439,356 + +0.4
5,439,357 - -2.9
5,439,357 - -0.3
5,439,488 - -3.0
5,439,657 - PS417_25085 0.16 +0.5
5,439,667 + PS417_25085 0.17 -1.0
5,439,667 + PS417_25085 0.17 -0.4
5,439,667 + +3.2
5,439,668 - PS417_25085 0.17 +0.5
5,439,668 - PS417_25085 0.17 +1.0
5,439,668 - PS417_25085 0.17 +0.5
5,439,668 - PS417_25085 0.17 +1.2
5,439,668 - PS417_25085 0.17 -1.1
5,439,718 + PS417_25085 0.21 +0.2
5,439,719 - PS417_25085 0.21 -0.3
5,439,778 + PS417_25085 0.26 +0.1
5,439,778 + PS417_25085 0.26 -0.3
5,439,819 + PS417_25085 0.30 -2.4
5,439,819 + PS417_25085 0.30 +0.6
5,439,885 + PS417_25085 0.35 +0.1
5,439,937 + PS417_25085 0.39 -1.9
5,439,959 + PS417_25085 0.41 -0.6
5,439,960 - PS417_25085 0.41 +0.1
5,439,960 - PS417_25085 0.41 +0.3
5,439,960 - PS417_25085 0.41 -3.1
5,440,012 + PS417_25085 0.45 -0.0
5,440,106 + PS417_25085 0.53 -3.1
5,440,131 + PS417_25085 0.55 +0.8
5,440,132 - PS417_25085 0.55 -0.2
5,440,132 - PS417_25085 0.55 -1.0
5,440,132 - PS417_25085 0.55 -0.5
5,440,132 - PS417_25085 0.55 -0.2
5,440,205 - PS417_25085 0.61 +0.3
5,440,214 - PS417_25085 0.62 +0.1
5,440,229 + PS417_25085 0.63 -0.4
5,440,229 + PS417_25085 0.63 +1.3
5,440,377 + PS417_25085 0.76 +0.1

Or see this region's nucleotide sequence