Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25070 and PS417_25075 overlap by 16 nucleotides PS417_25075 and PS417_25080 are separated by 74 nucleotides PS417_25080 and PS417_25085 are separated by 68 nucleotides
PS417_25070: PS417_25070 - hypothetical protein, at 5,436,585 to 5,437,670
_25070
PS417_25075: PS417_25075 - hypothetical protein, at 5,437,655 to 5,438,221
_25075
PS417_25080: PS417_25080 - hypothetical protein, at 5,438,296 to 5,439,393
_25080
PS417_25085: PS417_25085 - hypothetical protein, at 5,439,462 to 5,440,670
_25085
Position (kb)
5438
5439
5440 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 5437.300 kb on - strand, within PS417_25070 at 5437.300 kb on - strand, within PS417_25070 at 5437.345 kb on + strand at 5437.346 kb on - strand, within PS417_25070 at 5437.379 kb on + strand at 5437.380 kb on - strand, within PS417_25070 at 5437.401 kb on + strand, within PS417_25070 at 5437.445 kb on - strand, within PS417_25070 at 5437.504 kb on - strand, within PS417_25070 at 5437.504 kb on - strand, within PS417_25070 at 5437.548 kb on + strand, within PS417_25070 at 5437.650 kb on + strand at 5437.656 kb on + strand at 5437.656 kb on + strand at 5437.657 kb on - strand at 5437.739 kb on + strand, within PS417_25075 at 5437.739 kb on + strand at 5437.740 kb on - strand, within PS417_25075 at 5437.741 kb on + strand, within PS417_25075 at 5437.741 kb on + strand, within PS417_25075 at 5437.741 kb on + strand, within PS417_25075 at 5437.741 kb on + strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.742 kb on - strand, within PS417_25075 at 5437.754 kb on + strand, within PS417_25075 at 5437.855 kb on + strand, within PS417_25075 at 5437.856 kb on - strand, within PS417_25075 at 5437.856 kb on - strand, within PS417_25075 at 5437.856 kb on - strand, within PS417_25075 at 5438.017 kb on - strand at 5438.221 kb on + strand at 5438.221 kb on + strand at 5438.492 kb on + strand, within PS417_25080 at 5438.492 kb on + strand, within PS417_25080 at 5438.492 kb on + strand, within PS417_25080 at 5438.492 kb on + strand, within PS417_25080 at 5438.493 kb on - strand, within PS417_25080 at 5438.573 kb on - strand, within PS417_25080 at 5438.573 kb on - strand, within PS417_25080 at 5438.710 kb on - strand, within PS417_25080 at 5438.734 kb on + strand, within PS417_25080 at 5438.782 kb on + strand, within PS417_25080 at 5438.788 kb on + strand, within PS417_25080 at 5438.788 kb on + strand, within PS417_25080 at 5438.788 kb on + strand, within PS417_25080 at 5438.789 kb on - strand, within PS417_25080 at 5438.790 kb on + strand, within PS417_25080 at 5438.798 kb on - strand, within PS417_25080 at 5438.901 kb on - strand, within PS417_25080 at 5439.022 kb on + strand, within PS417_25080 at 5439.023 kb on - strand, within PS417_25080 at 5439.249 kb on - strand, within PS417_25080 at 5439.257 kb on + strand, within PS417_25080 at 5439.258 kb on - strand, within PS417_25080 at 5439.298 kb on - strand at 5439.298 kb on - strand at 5439.356 kb on + strand at 5439.357 kb on - strand at 5439.357 kb on - strand at 5439.488 kb on - strand at 5439.657 kb on - strand, within PS417_25085 at 5439.667 kb on + strand, within PS417_25085 at 5439.667 kb on + strand, within PS417_25085 at 5439.667 kb on + strand at 5439.668 kb on - strand, within PS417_25085 at 5439.668 kb on - strand, within PS417_25085 at 5439.668 kb on - strand, within PS417_25085 at 5439.668 kb on - strand, within PS417_25085 at 5439.668 kb on - strand, within PS417_25085 at 5439.718 kb on + strand, within PS417_25085 at 5439.719 kb on - strand, within PS417_25085 at 5439.778 kb on + strand, within PS417_25085 at 5439.778 kb on + strand, within PS417_25085 at 5439.819 kb on + strand, within PS417_25085 at 5439.819 kb on + strand, within PS417_25085 at 5439.885 kb on + strand, within PS417_25085 at 5439.937 kb on + strand, within PS417_25085 at 5439.959 kb on + strand, within PS417_25085 at 5439.960 kb on - strand, within PS417_25085 at 5439.960 kb on - strand, within PS417_25085 at 5439.960 kb on - strand, within PS417_25085 at 5440.012 kb on + strand, within PS417_25085 at 5440.106 kb on + strand, within PS417_25085 at 5440.131 kb on + strand, within PS417_25085 at 5440.132 kb on - strand, within PS417_25085 at 5440.132 kb on - strand, within PS417_25085 at 5440.132 kb on - strand, within PS417_25085 at 5440.132 kb on - strand, within PS417_25085 at 5440.205 kb on - strand, within PS417_25085 at 5440.214 kb on - strand, within PS417_25085 at 5440.229 kb on + strand, within PS417_25085 at 5440.229 kb on + strand, within PS417_25085 at 5440.377 kb on + strand, within PS417_25085
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,437,300 - PS417_25070 0.66 -0.3 5,437,300 - PS417_25070 0.66 -0.8 5,437,345 + -0.5 5,437,346 - PS417_25070 0.70 -0.7 5,437,379 + +1.6 5,437,380 - PS417_25070 0.73 +3.5 5,437,401 + PS417_25070 0.75 -0.3 5,437,445 - PS417_25070 0.79 +0.8 5,437,504 - PS417_25070 0.85 -0.5 5,437,504 - PS417_25070 0.85 -2.1 5,437,548 + PS417_25070 0.89 +0.8 5,437,650 + -0.1 5,437,656 + +0.7 5,437,656 + -0.8 5,437,657 - -1.0 5,437,739 + PS417_25075 0.15 -1.5 5,437,739 + +4.0 5,437,740 - PS417_25075 0.15 +0.4 5,437,741 + PS417_25075 0.15 -3.0 5,437,741 + PS417_25075 0.15 +0.4 5,437,741 + PS417_25075 0.15 -0.7 5,437,741 + PS417_25075 0.15 -2.1 5,437,742 - PS417_25075 0.15 +0.1 5,437,742 - PS417_25075 0.15 +0.0 5,437,742 - PS417_25075 0.15 +0.0 5,437,742 - PS417_25075 0.15 +2.4 5,437,742 - PS417_25075 0.15 -0.7 5,437,742 - PS417_25075 0.15 -3.0 5,437,742 - PS417_25075 0.15 +1.2 5,437,754 + PS417_25075 0.17 -2.9 5,437,855 + PS417_25075 0.35 -0.2 5,437,856 - PS417_25075 0.35 +1.3 5,437,856 - PS417_25075 0.35 +0.0 5,437,856 - PS417_25075 0.35 -0.3 5,438,017 - +0.5 5,438,221 + -0.7 5,438,221 + +1.1 5,438,492 + PS417_25080 0.18 +1.1 5,438,492 + PS417_25080 0.18 -0.8 5,438,492 + PS417_25080 0.18 -3.6 5,438,492 + PS417_25080 0.18 -0.3 5,438,493 - PS417_25080 0.18 -2.9 5,438,573 - PS417_25080 0.25 -1.7 5,438,573 - PS417_25080 0.25 -2.2 5,438,710 - PS417_25080 0.38 -0.7 5,438,734 + PS417_25080 0.40 -0.9 5,438,782 + PS417_25080 0.44 +0.3 5,438,788 + PS417_25080 0.45 -1.2 5,438,788 + PS417_25080 0.45 -0.2 5,438,788 + PS417_25080 0.45 -0.3 5,438,789 - PS417_25080 0.45 -0.1 5,438,790 + PS417_25080 0.45 -0.1 5,438,798 - PS417_25080 0.46 -1.5 5,438,901 - PS417_25080 0.55 -1.1 5,439,022 + PS417_25080 0.66 +1.3 5,439,023 - PS417_25080 0.66 +0.0 5,439,249 - PS417_25080 0.87 -0.1 5,439,257 + PS417_25080 0.88 -0.2 5,439,258 - PS417_25080 0.88 -2.4 5,439,298 - +0.8 5,439,298 - +0.1 5,439,356 + +0.4 5,439,357 - -2.9 5,439,357 - -0.3 5,439,488 - -3.0 5,439,657 - PS417_25085 0.16 +0.5 5,439,667 + PS417_25085 0.17 -1.0 5,439,667 + PS417_25085 0.17 -0.4 5,439,667 + +3.2 5,439,668 - PS417_25085 0.17 +0.5 5,439,668 - PS417_25085 0.17 +1.0 5,439,668 - PS417_25085 0.17 +0.5 5,439,668 - PS417_25085 0.17 +1.2 5,439,668 - PS417_25085 0.17 -1.1 5,439,718 + PS417_25085 0.21 +0.2 5,439,719 - PS417_25085 0.21 -0.3 5,439,778 + PS417_25085 0.26 +0.1 5,439,778 + PS417_25085 0.26 -0.3 5,439,819 + PS417_25085 0.30 -2.4 5,439,819 + PS417_25085 0.30 +0.6 5,439,885 + PS417_25085 0.35 +0.1 5,439,937 + PS417_25085 0.39 -1.9 5,439,959 + PS417_25085 0.41 -0.6 5,439,960 - PS417_25085 0.41 +0.1 5,439,960 - PS417_25085 0.41 +0.3 5,439,960 - PS417_25085 0.41 -3.1 5,440,012 + PS417_25085 0.45 -0.0 5,440,106 + PS417_25085 0.53 -3.1 5,440,131 + PS417_25085 0.55 +0.8 5,440,132 - PS417_25085 0.55 -0.2 5,440,132 - PS417_25085 0.55 -1.0 5,440,132 - PS417_25085 0.55 -0.5 5,440,132 - PS417_25085 0.55 -0.2 5,440,205 - PS417_25085 0.61 +0.3 5,440,214 - PS417_25085 0.62 +0.1 5,440,229 + PS417_25085 0.63 -0.4 5,440,229 + PS417_25085 0.63 +1.3 5,440,377 + PS417_25085 0.76 +0.1
Or see this region's nucleotide sequence