Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24710 and PS417_24715 overlap by 1 nucleotides PS417_24715 and PS417_24720 are separated by 17 nucleotides
PS417_24710: PS417_24710 - lipoprotein, at 5,361,041 to 5,362,045
_24710
PS417_24715: PS417_24715 - lytic transglycosylase, at 5,362,045 to 5,363,055
_24715
PS417_24720: PS417_24720 - rod shape-determining protein RodA, at 5,363,073 to 5,364,218
_24720
Position (kb) 5362
5363
5364 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 5361.086 kb on + strand at 5361.086 kb on + strand at 5361.087 kb on - strand at 5361.087 kb on - strand at 5361.140 kb on + strand at 5361.141 kb on - strand at 5361.182 kb on - strand, within PS417_24710 at 5361.203 kb on - strand, within PS417_24710 at 5361.319 kb on + strand, within PS417_24710 at 5361.622 kb on - strand, within PS417_24710 at 5361.622 kb on - strand, within PS417_24710 at 5361.673 kb on - strand, within PS417_24710 at 5361.673 kb on - strand, within PS417_24710 at 5361.745 kb on - strand, within PS417_24710 at 5361.745 kb on - strand, within PS417_24710 at 5361.772 kb on - strand, within PS417_24710 at 5361.793 kb on - strand, within PS417_24710 at 5362.027 kb on - strand at 5362.046 kb on + strand at 5362.104 kb on - strand at 5362.104 kb on - strand at 5362.104 kb on - strand at 5362.104 kb on - strand at 5362.120 kb on - strand at 5362.122 kb on - strand at 5362.122 kb on - strand at 5362.206 kb on + strand, within PS417_24715 at 5362.207 kb on - strand, within PS417_24715 at 5362.207 kb on - strand, within PS417_24715 at 5362.207 kb on - strand, within PS417_24715 at 5362.370 kb on + strand, within PS417_24715 at 5362.370 kb on + strand, within PS417_24715 at 5362.413 kb on + strand, within PS417_24715 at 5362.413 kb on + strand, within PS417_24715 at 5362.414 kb on - strand at 5362.414 kb on - strand, within PS417_24715 at 5362.414 kb on - strand, within PS417_24715 at 5362.419 kb on + strand, within PS417_24715 at 5362.420 kb on - strand, within PS417_24715 at 5362.420 kb on - strand, within PS417_24715 at 5362.800 kb on - strand, within PS417_24715 at 5362.961 kb on + strand at 5362.961 kb on + strand at 5362.962 kb on - strand at 5362.962 kb on - strand at 5363.047 kb on + strand at 5363.048 kb on - strand at 5363.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,361,086 + -5.1 5,361,086 + -1.3 5,361,087 - -5.9 5,361,087 - -3.5 5,361,140 + -1.3 5,361,141 - -7.2 5,361,182 - PS417_24710 0.14 -5.0 5,361,203 - PS417_24710 0.16 -4.4 5,361,319 + PS417_24710 0.28 -3.4 5,361,622 - PS417_24710 0.58 -4.6 5,361,622 - PS417_24710 0.58 -6.4 5,361,673 - PS417_24710 0.63 -3.1 5,361,673 - PS417_24710 0.63 -5.7 5,361,745 - PS417_24710 0.70 -4.3 5,361,745 - PS417_24710 0.70 -3.9 5,361,772 - PS417_24710 0.73 -3.8 5,361,793 - PS417_24710 0.75 -6.3 5,362,027 - -4.0 5,362,046 + -2.6 5,362,104 - -6.3 5,362,104 - -3.1 5,362,104 - -3.4 5,362,104 - -3.6 5,362,120 - +0.1 5,362,122 - +0.5 5,362,122 - +0.9 5,362,206 + PS417_24715 0.16 -4.2 5,362,207 - PS417_24715 0.16 +0.0 5,362,207 - PS417_24715 0.16 +0.8 5,362,207 - PS417_24715 0.16 +0.4 5,362,370 + PS417_24715 0.32 +0.9 5,362,370 + PS417_24715 0.32 +0.7 5,362,413 + PS417_24715 0.36 +0.4 5,362,413 + PS417_24715 0.36 +1.3 5,362,414 - +2.4 5,362,414 - PS417_24715 0.36 +0.1 5,362,414 - PS417_24715 0.36 +1.6 5,362,419 + PS417_24715 0.37 +0.9 5,362,420 - PS417_24715 0.37 +1.0 5,362,420 - PS417_24715 0.37 +0.8 5,362,800 - PS417_24715 0.75 -0.3 5,362,961 + -0.5 5,362,961 + +0.0 5,362,962 - +1.4 5,362,962 - +0.8 5,363,047 + -0.2 5,363,048 - -1.1 5,363,048 - +0.4
Or see this region's nucleotide sequence