Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24615 and PS417_24620 are separated by 128 nucleotides PS417_24620 and PS417_24625 are separated by 131 nucleotides PS417_24625 and PS417_24630 are separated by 230 nucleotides
PS417_24615: PS417_24615 - hypothetical protein, at 5,342,168 to 5,342,722
_24615
PS417_24620: PS417_24620 - hypothetical protein, at 5,342,851 to 5,343,177
_24620
PS417_24625: PS417_24625 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 5,343,309 to 5,344,637
_24625
PS417_24630: PS417_24630 - ATP-binding protein, at 5,344,868 to 5,345,872
_24630
Position (kb) 5343
5344
5345 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 5342.432 kb on + strand, within PS417_24615 at 5342.666 kb on + strand, within PS417_24615 at 5342.667 kb on - strand at 5342.852 kb on + strand at 5343.095 kb on + strand, within PS417_24620 at 5343.095 kb on + strand, within PS417_24620 at 5343.096 kb on - strand, within PS417_24620 at 5343.096 kb on - strand, within PS417_24620 at 5343.111 kb on - strand, within PS417_24620 at 5343.151 kb on - strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.153 kb on - strand at 5343.153 kb on - strand at 5343.153 kb on - strand at 5343.204 kb on + strand at 5343.221 kb on + strand at 5343.222 kb on - strand at 5343.222 kb on - strand at 5343.223 kb on + strand at 5343.223 kb on + strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.324 kb on + strand at 5343.324 kb on + strand at 5343.324 kb on + strand at 5343.325 kb on - strand at 5343.325 kb on - strand at 5343.487 kb on - strand, within PS417_24625 at 5343.601 kb on - strand, within PS417_24625 at 5343.786 kb on + strand, within PS417_24625 at 5343.786 kb on + strand, within PS417_24625 at 5343.786 kb on + strand at 5343.787 kb on - strand, within PS417_24625 at 5344.320 kb on + strand, within PS417_24625 at 5344.321 kb on - strand, within PS417_24625 at 5344.695 kb on + strand at 5344.695 kb on + strand at 5344.695 kb on + strand at 5344.695 kb on - strand at 5344.696 kb on - strand at 5344.706 kb on + strand at 5344.706 kb on + strand at 5344.706 kb on + strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.788 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.793 kb on - strand at 5344.793 kb on - strand at 5345.123 kb on + strand, within PS417_24630 at 5345.453 kb on + strand, within PS417_24630 at 5345.537 kb on + strand, within PS417_24630
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,342,432 + PS417_24615 0.48 +0.6 5,342,666 + PS417_24615 0.90 -0.5 5,342,667 - +1.1 5,342,852 + +1.6 5,343,095 + PS417_24620 0.75 -1.3 5,343,095 + PS417_24620 0.75 -0.7 5,343,096 - PS417_24620 0.75 -0.4 5,343,096 - PS417_24620 0.75 -1.7 5,343,111 - PS417_24620 0.80 +1.4 5,343,151 - -1.4 5,343,152 + -1.6 5,343,152 + -0.1 5,343,152 + +2.6 5,343,152 + +0.1 5,343,152 + +0.4 5,343,152 + -0.9 5,343,152 + -0.3 5,343,152 + -0.5 5,343,152 + +1.2 5,343,153 - -6.2 5,343,153 - -0.1 5,343,153 - +3.1 5,343,204 + -0.2 5,343,221 + +0.4 5,343,222 - +0.7 5,343,222 - -1.7 5,343,223 + +0.5 5,343,223 + +1.3 5,343,272 - +0.2 5,343,272 - -0.1 5,343,272 - -0.5 5,343,272 - -1.4 5,343,272 - +1.5 5,343,324 + +0.0 5,343,324 + +0.9 5,343,324 + -0.7 5,343,325 - -0.2 5,343,325 - +0.3 5,343,487 - PS417_24625 0.13 -0.5 5,343,601 - PS417_24625 0.22 -0.2 5,343,786 + PS417_24625 0.36 +0.4 5,343,786 + PS417_24625 0.36 -2.8 5,343,786 + +0.3 5,343,787 - PS417_24625 0.36 -0.9 5,344,320 + PS417_24625 0.76 -0.5 5,344,321 - PS417_24625 0.76 -0.4 5,344,695 + +2.3 5,344,695 + -3.8 5,344,695 + -0.8 5,344,695 - -0.1 5,344,696 - +1.3 5,344,706 + -0.9 5,344,706 + -1.6 5,344,706 + +0.2 5,344,707 - -1.5 5,344,707 - -0.9 5,344,707 - -0.4 5,344,707 - -0.3 5,344,707 - +0.3 5,344,788 + -0.4 5,344,792 + +0.2 5,344,792 + -1.5 5,344,792 + -0.8 5,344,792 + -1.8 5,344,793 - +0.7 5,344,793 - -0.4 5,345,123 + PS417_24630 0.25 +0.7 5,345,453 + PS417_24630 0.58 -0.7 5,345,537 + PS417_24630 0.67 +0.1
Or see this region's nucleotide sequence