Strain Fitness in Pseudomonas simiae WCS417 around PS417_24115

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24110 and PS417_24115 are separated by 151 nucleotidesPS417_24115 and PS417_24120 are separated by 688 nucleotides PS417_24110: PS417_24110 - 4Fe-4S ferredoxin, at 5,219,817 to 5,222,627 _24110 PS417_24115: PS417_24115 - hypothetical protein, at 5,222,779 to 5,223,057 _24115 PS417_24120: PS417_24120 - integrase, at 5,223,746 to 5,225,002 _24120 Position (kb) 5222 5223 5224Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5221.929 kb on + strand, within PS417_24110at 5221.929 kb on + strand, within PS417_24110at 5221.929 kb on + strand, within PS417_24110at 5222.098 kb on - strand, within PS417_24110at 5222.118 kb on - strand, within PS417_24110at 5222.236 kb on + strand, within PS417_24110at 5222.236 kb on + strand, within PS417_24110at 5222.236 kb on + strand, within PS417_24110at 5222.245 kb on - strand, within PS417_24110at 5222.519 kb on + strandat 5222.519 kb on + strandat 5222.590 kb on - strandat 5222.590 kb on - strandat 5222.689 kb on + strandat 5222.689 kb on + strandat 5222.690 kb on - strandat 5222.774 kb on - strandat 5222.774 kb on - strandat 5222.778 kb on + strandat 5222.779 kb on - strandat 5222.779 kb on - strandat 5222.779 kb on - strandat 5222.896 kb on - strand, within PS417_24115at 5222.939 kb on + strand, within PS417_24115at 5223.570 kb on - strandat 5223.570 kb on - strandat 5223.570 kb on - strandat 5223.602 kb on + strandat 5223.762 kb on + strandat 5223.763 kb on - strandat 5223.785 kb on - strandat 5223.812 kb on + strandat 5223.812 kb on + strandat 5223.812 kb on + strandat 5223.812 kb on + strandat 5223.813 kb on - strandat 5223.813 kb on - strandat 5223.901 kb on + strandat 5223.913 kb on + strand, within PS417_24120at 5223.914 kb on - strand, within PS417_24120at 5223.914 kb on - strand, within PS417_24120at 5224.024 kb on + strand, within PS417_24120at 5224.030 kb on - strand, within PS417_24120

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,221,929 + PS417_24110 0.75 +1.7
5,221,929 + PS417_24110 0.75 +1.0
5,221,929 + PS417_24110 0.75 -0.2
5,222,098 - PS417_24110 0.81 +1.8
5,222,118 - PS417_24110 0.82 +0.3
5,222,236 + PS417_24110 0.86 -0.7
5,222,236 + PS417_24110 0.86 +0.5
5,222,236 + PS417_24110 0.86 -1.1
5,222,245 - PS417_24110 0.86 +0.2
5,222,519 + +1.3
5,222,519 + -0.5
5,222,590 - -0.5
5,222,590 - -1.2
5,222,689 + +0.2
5,222,689 + +0.7
5,222,690 - -1.2
5,222,774 - -2.3
5,222,774 - -1.3
5,222,778 + -3.3
5,222,779 - -0.7
5,222,779 - +0.6
5,222,779 - +1.4
5,222,896 - PS417_24115 0.42 -2.0
5,222,939 + PS417_24115 0.57 -0.3
5,223,570 - +1.1
5,223,570 - -1.5
5,223,570 - +1.3
5,223,602 + +0.1
5,223,762 + +0.8
5,223,763 - +1.0
5,223,785 - +1.3
5,223,812 + +0.5
5,223,812 + -3.1
5,223,812 + +0.0
5,223,812 + -0.9
5,223,813 - +1.0
5,223,813 - -0.9
5,223,901 + +3.0
5,223,913 + PS417_24120 0.13 -0.4
5,223,914 - PS417_24120 0.13 -1.7
5,223,914 - PS417_24120 0.13 +1.2
5,224,024 + PS417_24120 0.22 +0.2
5,224,030 - PS417_24120 0.23 -0.8

Or see this region's nucleotide sequence