Strain Fitness in Pseudomonas simiae WCS417 around PS417_23215

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23210 and PS417_23215 are separated by 2 nucleotidesPS417_23215 and PS417_23220 are separated by 145 nucleotides PS417_23210: PS417_23210 - serine acetyltransferase, at 5,027,859 to 5,028,641 _23210 PS417_23215: PS417_23215 - RNA methyltransferase, at 5,028,644 to 5,029,414 _23215 PS417_23220: PS417_23220 - inositol monophosphatase, at 5,029,560 to 5,030,375 _23220 Position (kb) 5028 5029 5030Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5027.870 kb on - strandat 5028.065 kb on - strand, within PS417_23210at 5028.658 kb on + strandat 5028.710 kb on + strandat 5028.712 kb on + strandat 5028.712 kb on + strandat 5028.713 kb on - strandat 5028.713 kb on - strandat 5028.713 kb on - strandat 5028.835 kb on - strand, within PS417_23215at 5028.835 kb on - strand, within PS417_23215at 5028.835 kb on - strand, within PS417_23215at 5028.902 kb on + strand, within PS417_23215at 5028.903 kb on - strand, within PS417_23215at 5028.951 kb on + strand, within PS417_23215at 5029.381 kb on + strandat 5029.472 kb on - strandat 5029.486 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,027,870 - +0.2
5,028,065 - PS417_23210 0.26 +0.1
5,028,658 + +0.7
5,028,710 + +1.9
5,028,712 + -0.2
5,028,712 + +0.2
5,028,713 - +3.0
5,028,713 - -0.2
5,028,713 - -1.7
5,028,835 - PS417_23215 0.25 +1.2
5,028,835 - PS417_23215 0.25 +1.3
5,028,835 - PS417_23215 0.25 -0.5
5,028,902 + PS417_23215 0.33 +0.8
5,028,903 - PS417_23215 0.34 +1.0
5,028,951 + PS417_23215 0.40 +1.1
5,029,381 + +0.4
5,029,472 - +1.1
5,029,486 - -2.8

Or see this region's nucleotide sequence