Strain Fitness in Pseudomonas simiae WCS417 around PS417_21835

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_21825 and PS417_21830 are separated by 123 nucleotidesPS417_21830 and PS417_21835 are separated by 190 nucleotidesPS417_21835 and PS417_21840 are separated by 270 nucleotides PS417_21825: PS417_21825 - hydrolase, at 4,739,230 to 4,740,279 _21825 PS417_21830: PS417_21830 - TetR family transcriptional regulator, at 4,740,403 to 4,741,029 _21830 PS417_21835: PS417_21835 - histidine kinase, at 4,741,220 to 4,742,269 _21835 PS417_21840: PS417_21840 - chemotaxis protein, at 4,742,540 to 4,743,859 _21840 Position (kb) 4741 4742 4743Strain fitness (log2 ratio) -2 -1 0 1 2at 4740.281 kb on + strandat 4740.282 kb on - strandat 4740.282 kb on - strandat 4740.294 kb on + strandat 4740.295 kb on - strandat 4740.295 kb on - strandat 4740.326 kb on + strandat 4740.327 kb on - strandat 4740.544 kb on + strand, within PS417_21830at 4740.921 kb on + strand, within PS417_21830at 4740.922 kb on - strand, within PS417_21830at 4741.113 kb on - strandat 4741.137 kb on - strandat 4741.146 kb on + strandat 4741.147 kb on - strandat 4741.147 kb on - strandat 4741.147 kb on - strandat 4741.195 kb on + strandat 4741.195 kb on + strandat 4741.196 kb on - strandat 4741.261 kb on + strandat 4741.261 kb on + strandat 4741.262 kb on - strandat 4741.262 kb on - strandat 4741.265 kb on + strandat 4741.265 kb on + strandat 4741.266 kb on - strandat 4741.266 kb on - strandat 4741.451 kb on + strand, within PS417_21835at 4741.451 kb on + strand, within PS417_21835at 4741.452 kb on - strand, within PS417_21835at 4741.631 kb on - strand, within PS417_21835at 4741.664 kb on + strand, within PS417_21835at 4741.664 kb on + strand, within PS417_21835at 4741.691 kb on + strand, within PS417_21835at 4741.719 kb on - strand, within PS417_21835at 4741.733 kb on - strand, within PS417_21835at 4741.925 kb on - strand, within PS417_21835at 4742.286 kb on + strandat 4742.287 kb on - strandat 4742.466 kb on - strandat 4742.544 kb on + strandat 4742.545 kb on - strandat 4742.569 kb on - strandat 4742.774 kb on + strand, within PS417_21840at 4742.873 kb on + strand, within PS417_21840at 4742.873 kb on + strand, within PS417_21840at 4743.206 kb on - strand, within PS417_21840at 4743.239 kb on + strand, within PS417_21840at 4743.240 kb on - strand, within PS417_21840at 4743.252 kb on - strand, within PS417_21840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
4,740,281 + +1.5
4,740,282 - +1.1
4,740,282 - +0.4
4,740,294 + +0.4
4,740,295 - -0.2
4,740,295 - -0.0
4,740,326 + -2.7
4,740,327 - +0.6
4,740,544 + PS417_21830 0.22 -1.4
4,740,921 + PS417_21830 0.83 +0.5
4,740,922 - PS417_21830 0.83 +1.8
4,741,113 - +1.4
4,741,137 - -2.3
4,741,146 + -1.2
4,741,147 - +0.3
4,741,147 - -0.9
4,741,147 - -0.2
4,741,195 + +0.2
4,741,195 + -1.0
4,741,196 - +2.2
4,741,261 + +0.0
4,741,261 + -1.4
4,741,262 - +1.0
4,741,262 - -0.3
4,741,265 + +0.4
4,741,265 + -1.4
4,741,266 - +0.7
4,741,266 - -1.6
4,741,451 + PS417_21835 0.22 +2.0
4,741,451 + PS417_21835 0.22 +2.2
4,741,452 - PS417_21835 0.22 -0.7
4,741,631 - PS417_21835 0.39 +0.3
4,741,664 + PS417_21835 0.42 +1.1
4,741,664 + PS417_21835 0.42 +2.1
4,741,691 + PS417_21835 0.45 +1.8
4,741,719 - PS417_21835 0.48 -0.5
4,741,733 - PS417_21835 0.49 +0.6
4,741,925 - PS417_21835 0.67 +1.6
4,742,286 + +0.5
4,742,287 - -0.6
4,742,466 - +0.5
4,742,544 + -2.6
4,742,545 - +1.1
4,742,569 - -1.1
4,742,774 + PS417_21840 0.18 +0.3
4,742,873 + PS417_21840 0.25 +0.1
4,742,873 + PS417_21840 0.25 +1.0
4,743,206 - PS417_21840 0.50 -0.3
4,743,239 + PS417_21840 0.53 -0.9
4,743,240 - PS417_21840 0.53 +0.1
4,743,252 - PS417_21840 0.54 -0.7

Or see this region's nucleotide sequence