Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21805 and PS417_21810 are separated by 93 nucleotides PS417_21810 and PS417_21815 are separated by 223 nucleotides PS417_21815 and PS417_21820 are separated by 97 nucleotides PS417_21820 and PS417_21825 are separated by 327 nucleotides
PS417_21805: PS417_21805 - hypothetical protein, at 4,735,130 to 4,736,077
_21805
PS417_21810: PS417_21810 - hypothetical protein, at 4,736,171 to 4,736,536
_21810
PS417_21815: PS417_21815 - amidase, at 4,736,760 to 4,738,262
_21815
PS417_21820: PS417_21820 - hypothetical protein, at 4,738,360 to 4,738,902
_21820
PS417_21825: PS417_21825 - hydrolase, at 4,739,230 to 4,740,279
_21825
Position (kb)
4736
4737
4738
4739 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4735.776 kb on - strand, within PS417_21805 at 4735.776 kb on - strand, within PS417_21805 at 4735.776 kb on - strand, within PS417_21805 at 4735.776 kb on - strand, within PS417_21805 at 4735.833 kb on - strand, within PS417_21805 at 4735.848 kb on - strand, within PS417_21805 at 4735.875 kb on - strand, within PS417_21805 at 4735.937 kb on + strand, within PS417_21805 at 4735.938 kb on - strand, within PS417_21805 at 4736.076 kb on - strand at 4736.136 kb on - strand at 4736.535 kb on - strand at 4736.535 kb on - strand at 4736.854 kb on + strand at 4736.855 kb on - strand at 4736.855 kb on - strand at 4736.855 kb on - strand at 4736.883 kb on + strand at 4736.884 kb on - strand at 4736.884 kb on - strand at 4736.935 kb on + strand, within PS417_21815 at 4736.936 kb on - strand, within PS417_21815 at 4737.181 kb on + strand, within PS417_21815 at 4737.181 kb on + strand, within PS417_21815 at 4737.185 kb on + strand, within PS417_21815 at 4737.185 kb on + strand, within PS417_21815 at 4737.185 kb on + strand, within PS417_21815 at 4737.216 kb on + strand, within PS417_21815 at 4737.217 kb on - strand, within PS417_21815 at 4737.226 kb on + strand, within PS417_21815 at 4737.402 kb on + strand, within PS417_21815 at 4737.402 kb on + strand, within PS417_21815 at 4737.412 kb on + strand, within PS417_21815 at 4737.412 kb on + strand, within PS417_21815 at 4737.419 kb on + strand, within PS417_21815 at 4737.596 kb on + strand, within PS417_21815 at 4737.597 kb on - strand, within PS417_21815 at 4737.597 kb on - strand, within PS417_21815 at 4737.597 kb on - strand, within PS417_21815 at 4738.153 kb on + strand at 4738.215 kb on + strand at 4738.215 kb on + strand at 4738.262 kb on + strand at 4738.262 kb on + strand at 4738.262 kb on + strand at 4738.263 kb on - strand at 4738.263 kb on - strand at 4738.263 kb on - strand at 4738.438 kb on + strand, within PS417_21820 at 4738.870 kb on + strand at 4738.871 kb on - strand at 4738.995 kb on + strand at 4738.995 kb on + strand at 4738.996 kb on - strand at 4739.083 kb on + strand at 4739.083 kb on + strand at 4739.083 kb on + strand at 4739.084 kb on - strand at 4739.086 kb on - strand at 4739.112 kb on + strand at 4739.112 kb on + strand at 4739.112 kb on + strand at 4739.112 kb on + strand at 4739.121 kb on + strand at 4739.126 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,735,776 - PS417_21805 0.68 -1.7 4,735,776 - PS417_21805 0.68 -0.3 4,735,776 - PS417_21805 0.68 +0.7 4,735,776 - PS417_21805 0.68 -0.2 4,735,833 - PS417_21805 0.74 +1.4 4,735,848 - PS417_21805 0.76 +0.8 4,735,875 - PS417_21805 0.79 +0.2 4,735,937 + PS417_21805 0.85 +1.0 4,735,938 - PS417_21805 0.85 -1.1 4,736,076 - -2.5 4,736,136 - +1.2 4,736,535 - +0.4 4,736,535 - -1.2 4,736,854 + -2.6 4,736,855 - +3.4 4,736,855 - +0.5 4,736,855 - -1.9 4,736,883 + -0.5 4,736,884 - +0.7 4,736,884 - -0.2 4,736,935 + PS417_21815 0.12 +0.5 4,736,936 - PS417_21815 0.12 +1.0 4,737,181 + PS417_21815 0.28 +1.1 4,737,181 + PS417_21815 0.28 +0.1 4,737,185 + PS417_21815 0.28 +1.1 4,737,185 + PS417_21815 0.28 -0.4 4,737,185 + PS417_21815 0.28 -0.3 4,737,216 + PS417_21815 0.30 +0.2 4,737,217 - PS417_21815 0.30 +0.3 4,737,226 + PS417_21815 0.31 -1.5 4,737,402 + PS417_21815 0.43 +1.7 4,737,402 + PS417_21815 0.43 +1.0 4,737,412 + PS417_21815 0.43 +0.5 4,737,412 + PS417_21815 0.43 +0.3 4,737,419 + PS417_21815 0.44 +0.1 4,737,596 + PS417_21815 0.56 -1.0 4,737,597 - PS417_21815 0.56 +1.6 4,737,597 - PS417_21815 0.56 -1.1 4,737,597 - PS417_21815 0.56 +0.5 4,738,153 + +1.8 4,738,215 + +0.7 4,738,215 + +0.9 4,738,262 + -2.0 4,738,262 + +0.3 4,738,262 + +1.4 4,738,263 - +1.3 4,738,263 - +0.4 4,738,263 - +1.9 4,738,438 + PS417_21820 0.14 +0.3 4,738,870 + +1.8 4,738,871 - +2.8 4,738,995 + +3.6 4,738,995 + -1.6 4,738,996 - -1.2 4,739,083 + +0.0 4,739,083 + -0.3 4,739,083 + -0.4 4,739,084 - +1.2 4,739,086 - +0.1 4,739,112 + +0.7 4,739,112 + +0.1 4,739,112 + -2.5 4,739,112 + -1.1 4,739,121 + -1.2 4,739,126 - -3.1
Or see this region's nucleotide sequence