Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01985 and PS417_01990 are separated by 10 nucleotides PS417_01990 and PS417_01995 are separated by 98 nucleotides PS417_01995 and PS417_02000 overlap by 21 nucleotides
PS417_01985: PS417_01985 - 3-dehydroquinate synthase, at 440,397 to 441,497
_01985
PS417_01990: PS417_01990 - cell division protein, at 441,508 to 443,079
_01990
PS417_01995: PS417_01995 - hypothetical protein, at 443,178 to 443,453
_01995
PS417_02000: PS417_02000 - glutamate synthase, at 443,433 to 447,878
_02000
Position (kb) 441
442
443
444 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 441.489 kb on - strand at 441.548 kb on - strand at 441.861 kb on - strand, within PS417_01990 at 441.861 kb on - strand, within PS417_01990 at 441.889 kb on + strand, within PS417_01990 at 441.890 kb on - strand, within PS417_01990 at 441.983 kb on + strand, within PS417_01990 at 441.984 kb on - strand, within PS417_01990 at 441.984 kb on - strand, within PS417_01990 at 441.984 kb on - strand, within PS417_01990 at 442.073 kb on - strand, within PS417_01990 at 442.287 kb on + strand, within PS417_01990 at 442.298 kb on + strand, within PS417_01990 at 442.901 kb on - strand, within PS417_01990 at 442.951 kb on + strand at 443.149 kb on + strand at 443.149 kb on + strand at 443.149 kb on + strand at 443.236 kb on + strand, within PS417_01995 at 443.255 kb on + strand, within PS417_01995 at 443.317 kb on - strand, within PS417_01995 at 443.317 kb on - strand, within PS417_01995 at 443.520 kb on - strand at 443.686 kb on - strand at 443.916 kb on - strand, within PS417_02000 at 443.964 kb on + strand, within PS417_02000 at 443.997 kb on + strand, within PS417_02000 at 443.998 kb on - strand, within PS417_02000 at 443.998 kb on - strand, within PS417_02000 at 443.998 kb on - strand, within PS417_02000 at 443.999 kb on + strand, within PS417_02000 at 444.037 kb on - strand, within PS417_02000
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 441,489 - -2.3 441,548 - -2.0 441,861 - PS417_01990 0.22 -3.5 441,861 - PS417_01990 0.22 -2.8 441,889 + PS417_01990 0.24 -3.6 441,890 - PS417_01990 0.24 -3.1 441,983 + PS417_01990 0.30 -6.7 441,984 - PS417_01990 0.30 -4.1 441,984 - PS417_01990 0.30 -4.5 441,984 - PS417_01990 0.30 -0.4 442,073 - PS417_01990 0.36 -2.2 442,287 + PS417_01990 0.50 -2.6 442,298 + PS417_01990 0.50 -5.0 442,901 - PS417_01990 0.89 -1.6 442,951 + -3.7 443,149 + +0.6 443,149 + +0.8 443,149 + -0.4 443,236 + PS417_01995 0.21 +1.2 443,255 + PS417_01995 0.28 +0.0 443,317 - PS417_01995 0.50 +0.1 443,317 - PS417_01995 0.50 -1.3 443,520 - -1.6 443,686 - -1.6 443,916 - PS417_02000 0.11 -3.0 443,964 + PS417_02000 0.12 -1.6 443,997 + PS417_02000 0.13 -0.8 443,998 - PS417_02000 0.13 -4.3 443,998 - PS417_02000 0.13 -3.5 443,998 - PS417_02000 0.13 -2.6 443,999 + PS417_02000 0.13 -3.6 444,037 - PS417_02000 0.14 -2.6
Or see this region's nucleotide sequence