Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19655 and PS417_19660 overlap by 1 nucleotides PS417_19660 and PS417_19665 are separated by 51 nucleotides PS417_19665 and PS417_19670 are separated by 15 nucleotides PS417_19670 and PS417_19675 overlap by 1 nucleotides
PS417_19655: PS417_19655 - chemotaxis protein CheW, at 4,272,201 to 4,272,989
_19655
PS417_19660: PS417_19660 - cobalamin biosynthesis protein CobQ, at 4,272,989 to 4,273,777
_19660
PS417_19665: PS417_19665 - flagellar motor protein MotD, at 4,273,829 to 4,274,716
_19665
PS417_19670: PS417_19670 - flagellar motor protein, at 4,274,732 to 4,275,472
_19670
PS417_19675: PS417_19675 - chemotaxis protein CheY, at 4,275,472 to 4,276,599
_19675
Position (kb) 4273
4274
4275 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 4273.052 kb on + strand at 4273.052 kb on + strand at 4273.134 kb on + strand, within PS417_19660 at 4273.134 kb on + strand, within PS417_19660 at 4273.134 kb on + strand, within PS417_19660 at 4273.599 kb on + strand, within PS417_19660 at 4273.600 kb on - strand, within PS417_19660 at 4273.638 kb on + strand, within PS417_19660 at 4273.639 kb on - strand, within PS417_19660 at 4273.825 kb on - strand at 4273.825 kb on - strand at 4274.094 kb on - strand, within PS417_19665 at 4274.094 kb on - strand, within PS417_19665 at 4274.581 kb on - strand, within PS417_19665 at 4274.581 kb on - strand, within PS417_19665 at 4274.610 kb on + strand, within PS417_19665 at 4274.610 kb on + strand, within PS417_19665 at 4274.723 kb on + strand at 4274.723 kb on + strand at 4274.724 kb on - strand at 4274.724 kb on - strand at 4274.724 kb on - strand at 4274.724 kb on - strand at 4274.800 kb on + strand at 4274.901 kb on + strand, within PS417_19670 at 4275.075 kb on + strand, within PS417_19670 at 4275.231 kb on - strand, within PS417_19670 at 4275.411 kb on + strand at 4275.518 kb on + strand at 4275.566 kb on + strand at 4275.567 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,273,052 + -1.0 4,273,052 + -5.6 4,273,134 + PS417_19660 0.18 -7.8 4,273,134 + PS417_19660 0.18 -3.6 4,273,134 + PS417_19660 0.18 -6.0 4,273,599 + PS417_19660 0.77 -4.2 4,273,600 - PS417_19660 0.77 -6.1 4,273,638 + PS417_19660 0.82 -7.4 4,273,639 - PS417_19660 0.82 -4.0 4,273,825 - -3.0 4,273,825 - -0.3 4,274,094 - PS417_19665 0.30 -3.6 4,274,094 - PS417_19665 0.30 -3.1 4,274,581 - PS417_19665 0.85 -2.9 4,274,581 - PS417_19665 0.85 -1.7 4,274,610 + PS417_19665 0.88 -4.1 4,274,610 + PS417_19665 0.88 -4.7 4,274,723 + -4.1 4,274,723 + +0.5 4,274,724 - -2.1 4,274,724 - -3.6 4,274,724 - -5.3 4,274,724 - +0.1 4,274,800 + -2.9 4,274,901 + PS417_19670 0.23 +0.1 4,275,075 + PS417_19670 0.46 -2.7 4,275,231 - PS417_19670 0.67 +0.1 4,275,411 + -4.6 4,275,518 + -3.6 4,275,566 + -0.7 4,275,567 - -5.6
Or see this region's nucleotide sequence