Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19150 and PS417_19155 overlap by 8 nucleotides PS417_19155 and PS417_19160 are separated by 3 nucleotides PS417_19160 and PS417_19165 are separated by 235 nucleotides
PS417_19150: PS417_19150 - ABC transporter ATP-binding protein, at 4,137,590 to 4,139,392
_19150
PS417_19155: PS417_19155 - DSBA oxidoreductase, at 4,139,385 to 4,140,020
_19155
PS417_19160: PS417_19160 - hypothetical protein, at 4,140,024 to 4,140,965
_19160
PS417_19165: PS417_19165 - insecticidal toxin complex protein, at 4,141,201 to 4,143,630
_19165
Position (kb)
4140
4141 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4139.665 kb on + strand, within PS417_19155 at 4139.665 kb on + strand, within PS417_19155 at 4139.666 kb on - strand, within PS417_19155 at 4139.666 kb on - strand, within PS417_19155 at 4139.762 kb on - strand, within PS417_19155 at 4139.846 kb on - strand, within PS417_19155 at 4139.997 kb on + strand at 4139.997 kb on + strand at 4139.998 kb on - strand at 4139.998 kb on - strand at 4140.001 kb on + strand at 4140.001 kb on + strand at 4140.002 kb on - strand at 4140.049 kb on + strand at 4140.049 kb on + strand at 4140.049 kb on + strand at 4140.146 kb on + strand, within PS417_19160 at 4140.181 kb on + strand, within PS417_19160 at 4140.181 kb on + strand, within PS417_19160 at 4140.181 kb on + strand, within PS417_19160 at 4140.182 kb on - strand, within PS417_19160 at 4140.340 kb on + strand at 4140.340 kb on + strand, within PS417_19160 at 4140.398 kb on - strand, within PS417_19160 at 4140.628 kb on + strand, within PS417_19160 at 4140.628 kb on + strand, within PS417_19160 at 4140.628 kb on + strand, within PS417_19160 at 4140.629 kb on - strand, within PS417_19160 at 4140.629 kb on - strand, within PS417_19160 at 4140.932 kb on + strand at 4140.932 kb on + strand at 4140.932 kb on + strand at 4141.089 kb on + strand at 4141.090 kb on - strand at 4141.090 kb on - strand at 4141.366 kb on + strand at 4141.393 kb on + strand at 4141.394 kb on - strand at 4141.394 kb on - strand at 4141.395 kb on + strand at 4141.395 kb on + strand at 4141.395 kb on + strand at 4141.412 kb on - strand at 4141.412 kb on - strand at 4141.412 kb on - strand at 4141.435 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,139,665 + PS417_19155 0.44 -0.4 4,139,665 + PS417_19155 0.44 +2.4 4,139,666 - PS417_19155 0.44 +0.7 4,139,666 - PS417_19155 0.44 +1.7 4,139,762 - PS417_19155 0.59 +0.8 4,139,846 - PS417_19155 0.72 +0.1 4,139,997 + -1.9 4,139,997 + -1.8 4,139,998 - +0.3 4,139,998 - +0.1 4,140,001 + +0.7 4,140,001 + -0.1 4,140,002 - -0.8 4,140,049 + +1.4 4,140,049 + +0.1 4,140,049 + +0.6 4,140,146 + PS417_19160 0.13 -0.3 4,140,181 + PS417_19160 0.17 -1.8 4,140,181 + PS417_19160 0.17 -2.0 4,140,181 + PS417_19160 0.17 -0.5 4,140,182 - PS417_19160 0.17 -0.7 4,140,340 + -1.1 4,140,340 + PS417_19160 0.34 +0.7 4,140,398 - PS417_19160 0.40 -1.3 4,140,628 + PS417_19160 0.64 +0.8 4,140,628 + PS417_19160 0.64 +0.5 4,140,628 + PS417_19160 0.64 -1.5 4,140,629 - PS417_19160 0.64 -2.2 4,140,629 - PS417_19160 0.64 -2.8 4,140,932 + +0.1 4,140,932 + -2.1 4,140,932 + -1.2 4,141,089 + +0.4 4,141,090 - +0.8 4,141,090 - +2.0 4,141,366 + -0.5 4,141,393 + -1.8 4,141,394 - +0.9 4,141,394 - +0.2 4,141,395 + -1.0 4,141,395 + -2.3 4,141,395 + +0.2 4,141,412 - -1.9 4,141,412 - +0.7 4,141,412 - -1.6 4,141,435 + +0.6
Or see this region's nucleotide sequence