Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19075 and PS417_19080 are separated by 298 nucleotides PS417_19080 and PS417_19085 are separated by 454 nucleotides PS417_19085 and PS417_19090 overlap by 14 nucleotides PS417_19090 and PS417_19095 overlap by 1 nucleotides
PS417_19075: PS417_19075 - ABC transporter ATP-binding protein, at 4,126,315 to 4,127,646
_19075
PS417_19080: PS417_19080 - tRNA-Asn, at 4,127,945 to 4,128,017
_19080
PS417_19085: PS417_19085 - hypothetical protein, at 4,128,472 to 4,128,705
_19085
PS417_19090: PS417_19090 - hypothetical protein, at 4,128,692 to 4,128,880
_19090
PS417_19095: PS417_19095 - hypothetical protein, at 4,128,880 to 4,129,164
_19095
Position (kb) 4127
4128
4129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4127.017 kb on + strand, within PS417_19075 at 4127.073 kb on + strand, within PS417_19075 at 4127.074 kb on - strand, within PS417_19075 at 4127.080 kb on + strand, within PS417_19075 at 4127.097 kb on + strand, within PS417_19075 at 4127.097 kb on + strand, within PS417_19075 at 4127.098 kb on - strand, within PS417_19075 at 4127.207 kb on + strand at 4127.207 kb on + strand, within PS417_19075 at 4127.207 kb on + strand, within PS417_19075 at 4127.318 kb on + strand, within PS417_19075 at 4127.319 kb on - strand, within PS417_19075 at 4127.454 kb on + strand, within PS417_19075 at 4127.500 kb on - strand, within PS417_19075 at 4127.539 kb on - strand at 4127.541 kb on - strand at 4127.650 kb on + strand at 4127.651 kb on - strand at 4127.796 kb on + strand at 4127.796 kb on + strand at 4127.941 kb on + strand at 4128.056 kb on + strand at 4128.168 kb on - strand at 4128.258 kb on + strand at 4128.368 kb on + strand at 4128.368 kb on + strand at 4128.509 kb on + strand at 4128.514 kb on - strand, within PS417_19085 at 4128.516 kb on - strand, within PS417_19085 at 4128.568 kb on + strand, within PS417_19085 at 4128.569 kb on - strand, within PS417_19085 at 4128.617 kb on - strand, within PS417_19085 at 4128.650 kb on - strand, within PS417_19085 at 4128.694 kb on - strand at 4128.698 kb on - strand at 4128.737 kb on - strand, within PS417_19090 at 4128.756 kb on + strand, within PS417_19090 at 4128.757 kb on - strand, within PS417_19090 at 4128.795 kb on - strand, within PS417_19090 at 4128.920 kb on + strand, within PS417_19095 at 4128.926 kb on - strand, within PS417_19095
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,127,017 + PS417_19075 0.53 -0.8 4,127,073 + PS417_19075 0.57 +0.5 4,127,074 - PS417_19075 0.57 -1.0 4,127,080 + PS417_19075 0.57 +1.2 4,127,097 + PS417_19075 0.59 +0.2 4,127,097 + PS417_19075 0.59 -0.1 4,127,098 - PS417_19075 0.59 -1.3 4,127,207 + +1.1 4,127,207 + PS417_19075 0.67 -2.9 4,127,207 + PS417_19075 0.67 -1.5 4,127,318 + PS417_19075 0.75 +0.2 4,127,319 - PS417_19075 0.75 -0.5 4,127,454 + PS417_19075 0.86 -1.9 4,127,500 - PS417_19075 0.89 +0.4 4,127,539 - -0.5 4,127,541 - -0.1 4,127,650 + -0.2 4,127,651 - +0.6 4,127,796 + +0.0 4,127,796 + +1.4 4,127,941 + -0.5 4,128,056 + +0.1 4,128,168 - +0.8 4,128,258 + -2.4 4,128,368 + +0.8 4,128,368 + -0.0 4,128,509 + +2.3 4,128,514 - PS417_19085 0.18 -3.5 4,128,516 - PS417_19085 0.19 +1.3 4,128,568 + PS417_19085 0.41 +0.3 4,128,569 - PS417_19085 0.41 +1.0 4,128,617 - PS417_19085 0.62 +1.3 4,128,650 - PS417_19085 0.76 -0.2 4,128,694 - +0.2 4,128,698 - +1.4 4,128,737 - PS417_19090 0.24 -1.6 4,128,756 + PS417_19090 0.34 +1.8 4,128,757 - PS417_19090 0.34 -0.8 4,128,795 - PS417_19090 0.54 -0.5 4,128,920 + PS417_19095 0.14 -2.1 4,128,926 - PS417_19095 0.16 +0.4
Or see this region's nucleotide sequence