Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14970 and PS417_14975 overlap by 45 nucleotides PS417_14975 and PS417_14980 are separated by 151 nucleotides PS417_14980 and PS417_14985 are separated by 131 nucleotides
PS417_14970: PS417_14970 - MFS transporter, at 3,272,620 to 3,273,819
_14970
PS417_14975: PS417_14975 - tRNA hydroxylase, at 3,273,775 to 3,274,377
_14975
PS417_14980: PS417_14980 - universal stress protein UspA, at 3,274,529 to 3,275,392
_14980
PS417_14985: PS417_14985 - Fe-S protein, at 3,275,524 to 3,275,997
_14985
Position (kb)
3274
3275
3276 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3273.529 kb on + strand, within PS417_14970 at 3273.530 kb on - strand, within PS417_14970 at 3273.714 kb on + strand at 3273.893 kb on + strand, within PS417_14975 at 3273.908 kb on + strand, within PS417_14975 at 3274.097 kb on + strand, within PS417_14975 at 3274.223 kb on + strand, within PS417_14975 at 3274.223 kb on + strand, within PS417_14975 at 3274.416 kb on + strand at 3274.489 kb on + strand at 3274.489 kb on + strand at 3274.490 kb on - strand at 3274.879 kb on + strand, within PS417_14980 at 3275.539 kb on + strand at 3275.565 kb on + strand at 3275.567 kb on + strand at 3275.672 kb on + strand, within PS417_14985 at 3275.720 kb on + strand, within PS417_14985 at 3275.720 kb on + strand, within PS417_14985 at 3275.733 kb on - strand, within PS417_14985 at 3275.883 kb on - strand, within PS417_14985 at 3276.085 kb on + strand at 3276.086 kb on - strand at 3276.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,273,529 + PS417_14970 0.76 +1.0 3,273,530 - PS417_14970 0.76 +0.9 3,273,714 + +0.3 3,273,893 + PS417_14975 0.20 -1.4 3,273,908 + PS417_14975 0.22 +0.3 3,274,097 + PS417_14975 0.53 -1.0 3,274,223 + PS417_14975 0.74 -0.8 3,274,223 + PS417_14975 0.74 -2.8 3,274,416 + -0.7 3,274,489 + +0.2 3,274,489 + +0.1 3,274,490 - -1.2 3,274,879 + PS417_14980 0.41 +1.7 3,275,539 + -1.0 3,275,565 + -3.1 3,275,567 + -0.2 3,275,672 + PS417_14985 0.31 -2.1 3,275,720 + PS417_14985 0.41 +0.5 3,275,720 + PS417_14985 0.41 -1.1 3,275,733 - PS417_14985 0.44 +0.6 3,275,883 - PS417_14985 0.76 +1.0 3,276,085 + +1.5 3,276,086 - -0.7 3,276,125 + +2.8
Or see this region's nucleotide sequence