Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14585 and PS417_14590 are separated by 94 nucleotides PS417_14590 and PS417_14595 overlap by 6 nucleotides PS417_14595 and PS417_14600 are separated by 116 nucleotides
PS417_14585: PS417_14585 - MFS transporter, at 3,189,216 to 3,190,382
_14585
PS417_14590: PS417_14590 - LysR family transcriptional regulator, at 3,190,477 to 3,191,370
_14590
PS417_14595: PS417_14595 - pyrroline-5-carboxylate reductase, at 3,191,365 to 3,192,138
_14595
PS417_14600: PS417_14600 - bleomycin resistance protein, at 3,192,255 to 3,192,611
_14600
Position (kb)
3190
3191
3192 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3189.488 kb on + strand, within PS417_14585 at 3189.619 kb on - strand, within PS417_14585 at 3189.620 kb on + strand, within PS417_14585 at 3189.620 kb on + strand, within PS417_14585 at 3189.621 kb on - strand, within PS417_14585 at 3189.714 kb on - strand, within PS417_14585 at 3189.715 kb on + strand, within PS417_14585 at 3189.716 kb on - strand, within PS417_14585 at 3189.720 kb on - strand, within PS417_14585 at 3189.734 kb on + strand, within PS417_14585 at 3189.734 kb on + strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3190.224 kb on + strand, within PS417_14585 at 3190.238 kb on - strand, within PS417_14585 at 3190.238 kb on - strand, within PS417_14585 at 3190.293 kb on - strand at 3190.384 kb on + strand at 3190.435 kb on + strand at 3190.444 kb on + strand at 3190.511 kb on + strand at 3190.628 kb on + strand at 3190.628 kb on + strand, within PS417_14590 at 3190.629 kb on - strand, within PS417_14590 at 3190.875 kb on - strand, within PS417_14590 at 3191.366 kb on + strand at 3191.368 kb on + strand at 3191.440 kb on - strand at 3191.440 kb on - strand at 3191.608 kb on - strand, within PS417_14595 at 3191.639 kb on + strand, within PS417_14595 at 3191.892 kb on + strand, within PS417_14595 at 3191.893 kb on - strand, within PS417_14595 at 3191.893 kb on - strand, within PS417_14595 at 3192.177 kb on + strand at 3192.177 kb on + strand at 3192.178 kb on - strand at 3192.178 kb on - strand at 3192.218 kb on - strand at 3192.218 kb on - strand at 3192.269 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,189,488 + PS417_14585 0.23 -0.5 3,189,619 - PS417_14585 0.35 -0.6 3,189,620 + PS417_14585 0.35 +0.4 3,189,620 + PS417_14585 0.35 +0.3 3,189,621 - PS417_14585 0.35 +0.5 3,189,714 - PS417_14585 0.43 -1.5 3,189,715 + PS417_14585 0.43 -0.1 3,189,716 - PS417_14585 0.43 -0.3 3,189,720 - PS417_14585 0.43 -1.1 3,189,734 + PS417_14585 0.44 +3.3 3,189,734 + PS417_14585 0.44 -0.2 3,189,735 - PS417_14585 0.44 -1.1 3,189,735 - PS417_14585 0.44 -2.8 3,189,735 - PS417_14585 0.44 -3.0 3,189,735 - PS417_14585 0.44 -2.6 3,189,735 - PS417_14585 0.44 +0.7 3,189,735 - PS417_14585 0.44 -0.5 3,190,224 + PS417_14585 0.86 +1.1 3,190,238 - PS417_14585 0.88 -0.4 3,190,238 - PS417_14585 0.88 +0.2 3,190,293 - +1.9 3,190,384 + -0.6 3,190,435 + +0.5 3,190,444 + +0.1 3,190,511 + -2.6 3,190,628 + -0.3 3,190,628 + PS417_14590 0.17 -1.8 3,190,629 - PS417_14590 0.17 -1.6 3,190,875 - PS417_14590 0.45 -2.5 3,191,366 + +0.1 3,191,368 + +0.4 3,191,440 - -1.1 3,191,440 - -0.3 3,191,608 - PS417_14595 0.31 -1.2 3,191,639 + PS417_14595 0.35 -0.1 3,191,892 + PS417_14595 0.68 +0.1 3,191,893 - PS417_14595 0.68 -0.3 3,191,893 - PS417_14595 0.68 +1.3 3,192,177 + -1.2 3,192,177 + +0.2 3,192,178 - -1.2 3,192,178 - -1.2 3,192,218 - -2.6 3,192,218 - +1.4 3,192,269 + +0.3
Or see this region's nucleotide sequence