Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14530 and PS417_14535 are separated by 138 nucleotides PS417_14535 and PS417_14540 overlap by 1 nucleotides PS417_14540 and PS417_14545 overlap by 28 nucleotides
PS417_14530: PS417_14530 - acetylglucosaminylphosphatidylinositol deacetylase, at 3,176,743 to 3,177,504
_14530
PS417_14535: PS417_14535 - alpha/beta hydrolase, at 3,177,643 to 3,178,677
_14535
PS417_14540: PS417_14540 - cytochrome C oxidase subunit III, at 3,178,677 to 3,179,156
_14540
PS417_14545: PS417_14545 - amino acid transporter, at 3,179,129 to 3,180,526
_14545
Position (kb)
3177
3178
3179 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3176.827 kb on - strand, within PS417_14530 at 3177.274 kb on + strand, within PS417_14530 at 3177.274 kb on + strand, within PS417_14530 at 3177.275 kb on - strand, within PS417_14530 at 3177.516 kb on + strand at 3177.545 kb on + strand at 3177.546 kb on - strand at 3177.556 kb on + strand at 3177.587 kb on + strand at 3177.902 kb on - strand, within PS417_14535 at 3177.902 kb on - strand, within PS417_14535 at 3177.902 kb on - strand, within PS417_14535 at 3177.902 kb on - strand, within PS417_14535 at 3178.556 kb on - strand, within PS417_14535 at 3178.579 kb on + strand at 3178.579 kb on + strand at 3178.691 kb on + strand at 3178.691 kb on + strand at 3178.692 kb on - strand at 3179.017 kb on - strand, within PS417_14540 at 3179.361 kb on + strand, within PS417_14545 at 3179.361 kb on + strand, within PS417_14545 at 3179.362 kb on - strand, within PS417_14545 at 3179.386 kb on + strand, within PS417_14545 at 3179.387 kb on - strand, within PS417_14545 at 3179.387 kb on - strand, within PS417_14545 at 3179.492 kb on - strand, within PS417_14545 at 3179.507 kb on - strand, within PS417_14545
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,176,827 - PS417_14530 0.11 +0.3 3,177,274 + PS417_14530 0.70 -0.8 3,177,274 + PS417_14530 0.70 +1.1 3,177,275 - PS417_14530 0.70 +0.7 3,177,516 + -0.9 3,177,545 + +0.6 3,177,546 - +0.1 3,177,556 + -0.8 3,177,587 + -0.3 3,177,902 - PS417_14535 0.25 -2.1 3,177,902 - PS417_14535 0.25 -0.6 3,177,902 - PS417_14535 0.25 +0.2 3,177,902 - PS417_14535 0.25 -0.3 3,178,556 - PS417_14535 0.88 +1.1 3,178,579 + -3.3 3,178,579 + +0.1 3,178,691 + +0.2 3,178,691 + -0.1 3,178,692 - +1.7 3,179,017 - PS417_14540 0.71 +1.2 3,179,361 + PS417_14545 0.17 +0.0 3,179,361 + PS417_14545 0.17 +0.2 3,179,362 - PS417_14545 0.17 +0.7 3,179,386 + PS417_14545 0.18 +0.7 3,179,387 - PS417_14545 0.18 -1.5 3,179,387 - PS417_14545 0.18 -0.5 3,179,492 - PS417_14545 0.26 +0.5 3,179,507 - PS417_14545 0.27 -3.3
Or see this region's nucleotide sequence