Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13855 and PS417_13860 are separated by 12 nucleotides PS417_13860 and PS417_13865 are separated by 200 nucleotides PS417_13865 and PS417_13870 are separated by 70 nucleotides
PS417_13855: PS417_13855 - acetyl-CoA acetyltransferase, at 3,043,587 to 3,044,771
_13855
PS417_13860: PS417_13860 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 3,044,784 to 3,045,551
_13860
PS417_13865: PS417_13865 - bestrophin, at 3,045,752 to 3,046,645
_13865
PS417_13870: PS417_13870 - hypothetical protein, at 3,046,716 to 3,047,774
_13870
Position (kb)
3045
3046
3047 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3044.785 kb on + strand at 3044.785 kb on + strand at 3044.786 kb on - strand at 3044.786 kb on - strand at 3045.555 kb on + strand at 3045.556 kb on - strand at 3045.756 kb on + strand at 3045.757 kb on - strand at 3045.894 kb on - strand, within PS417_13865 at 3045.977 kb on + strand at 3045.977 kb on + strand, within PS417_13865 at 3046.159 kb on + strand, within PS417_13865 at 3046.275 kb on - strand, within PS417_13865 at 3046.361 kb on + strand, within PS417_13865 at 3046.363 kb on + strand, within PS417_13865 at 3046.364 kb on - strand, within PS417_13865 at 3046.364 kb on - strand, within PS417_13865 at 3046.388 kb on + strand, within PS417_13865 at 3046.389 kb on - strand, within PS417_13865 at 3046.389 kb on - strand, within PS417_13865 at 3046.389 kb on - strand, within PS417_13865 at 3046.470 kb on - strand, within PS417_13865 at 3046.578 kb on + strand at 3046.578 kb on + strand at 3046.631 kb on + strand at 3046.631 kb on + strand at 3046.632 kb on - strand at 3046.734 kb on + strand at 3046.734 kb on + strand at 3046.785 kb on + strand at 3046.893 kb on + strand, within PS417_13870 at 3046.893 kb on + strand, within PS417_13870 at 3046.962 kb on + strand, within PS417_13870 at 3047.271 kb on + strand, within PS417_13870 at 3047.272 kb on - strand, within PS417_13870 at 3047.410 kb on + strand, within PS417_13870
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,044,785 + +0.2 3,044,785 + -0.6 3,044,786 - +0.2 3,044,786 - +0.1 3,045,555 + +0.2 3,045,556 - -1.3 3,045,756 + -1.0 3,045,757 - -2.0 3,045,894 - PS417_13865 0.16 -2.0 3,045,977 + -0.4 3,045,977 + PS417_13865 0.25 +1.9 3,046,159 + PS417_13865 0.46 -1.9 3,046,275 - PS417_13865 0.59 -0.9 3,046,361 + PS417_13865 0.68 -1.0 3,046,363 + PS417_13865 0.68 -0.2 3,046,364 - PS417_13865 0.68 +0.5 3,046,364 - PS417_13865 0.68 -2.8 3,046,388 + PS417_13865 0.71 +0.6 3,046,389 - PS417_13865 0.71 -2.3 3,046,389 - PS417_13865 0.71 -2.1 3,046,389 - PS417_13865 0.71 -4.6 3,046,470 - PS417_13865 0.80 +1.2 3,046,578 + +1.4 3,046,578 + -1.7 3,046,631 + +0.1 3,046,631 + +0.9 3,046,632 - +1.3 3,046,734 + -1.2 3,046,734 + -0.7 3,046,785 + -1.7 3,046,893 + PS417_13870 0.17 -3.6 3,046,893 + PS417_13870 0.17 -4.1 3,046,962 + PS417_13870 0.23 -3.9 3,047,271 + PS417_13870 0.52 -3.6 3,047,272 - PS417_13870 0.53 -1.0 3,047,410 + PS417_13870 0.66 -0.9
Or see this region's nucleotide sequence