Strain Fitness in Pseudomonas simiae WCS417 around PS417_13865

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13855 and PS417_13860 are separated by 12 nucleotidesPS417_13860 and PS417_13865 are separated by 200 nucleotidesPS417_13865 and PS417_13870 are separated by 70 nucleotides PS417_13855: PS417_13855 - acetyl-CoA acetyltransferase, at 3,043,587 to 3,044,771 _13855 PS417_13860: PS417_13860 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 3,044,784 to 3,045,551 _13860 PS417_13865: PS417_13865 - bestrophin, at 3,045,752 to 3,046,645 _13865 PS417_13870: PS417_13870 - hypothetical protein, at 3,046,716 to 3,047,774 _13870 Position (kb) 3045 3046 3047Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3044.785 kb on + strandat 3044.785 kb on + strandat 3044.786 kb on - strandat 3044.786 kb on - strandat 3045.555 kb on + strandat 3045.556 kb on - strandat 3045.756 kb on + strandat 3045.757 kb on - strandat 3045.894 kb on - strand, within PS417_13865at 3045.977 kb on + strandat 3045.977 kb on + strand, within PS417_13865at 3046.159 kb on + strand, within PS417_13865at 3046.275 kb on - strand, within PS417_13865at 3046.361 kb on + strand, within PS417_13865at 3046.363 kb on + strand, within PS417_13865at 3046.364 kb on - strand, within PS417_13865at 3046.364 kb on - strand, within PS417_13865at 3046.388 kb on + strand, within PS417_13865at 3046.389 kb on - strand, within PS417_13865at 3046.389 kb on - strand, within PS417_13865at 3046.389 kb on - strand, within PS417_13865at 3046.470 kb on - strand, within PS417_13865at 3046.578 kb on + strandat 3046.578 kb on + strandat 3046.631 kb on + strandat 3046.631 kb on + strandat 3046.632 kb on - strandat 3046.734 kb on + strandat 3046.734 kb on + strandat 3046.785 kb on + strandat 3046.893 kb on + strand, within PS417_13870at 3046.893 kb on + strand, within PS417_13870at 3046.962 kb on + strand, within PS417_13870at 3047.271 kb on + strand, within PS417_13870at 3047.272 kb on - strand, within PS417_13870at 3047.410 kb on + strand, within PS417_13870

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,044,785 + +0.2
3,044,785 + -0.6
3,044,786 - +0.2
3,044,786 - +0.1
3,045,555 + +0.2
3,045,556 - -1.3
3,045,756 + -1.0
3,045,757 - -2.0
3,045,894 - PS417_13865 0.16 -2.0
3,045,977 + -0.4
3,045,977 + PS417_13865 0.25 +1.9
3,046,159 + PS417_13865 0.46 -1.9
3,046,275 - PS417_13865 0.59 -0.9
3,046,361 + PS417_13865 0.68 -1.0
3,046,363 + PS417_13865 0.68 -0.2
3,046,364 - PS417_13865 0.68 +0.5
3,046,364 - PS417_13865 0.68 -2.8
3,046,388 + PS417_13865 0.71 +0.6
3,046,389 - PS417_13865 0.71 -2.3
3,046,389 - PS417_13865 0.71 -2.1
3,046,389 - PS417_13865 0.71 -4.6
3,046,470 - PS417_13865 0.80 +1.2
3,046,578 + +1.4
3,046,578 + -1.7
3,046,631 + +0.1
3,046,631 + +0.9
3,046,632 - +1.3
3,046,734 + -1.2
3,046,734 + -0.7
3,046,785 + -1.7
3,046,893 + PS417_13870 0.17 -3.6
3,046,893 + PS417_13870 0.17 -4.1
3,046,962 + PS417_13870 0.23 -3.9
3,047,271 + PS417_13870 0.52 -3.6
3,047,272 - PS417_13870 0.53 -1.0
3,047,410 + PS417_13870 0.66 -0.9

Or see this region's nucleotide sequence