Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13620 and PS417_13625 are separated by 181 nucleotides PS417_13625 and PS417_13635 are separated by 164 nucleotides PS417_13635 and PS417_13640 overlap by 8 nucleotides
PS417_13620: PS417_13620 - thermostable hemolysin, at 2,998,739 to 2,999,413
_13620
PS417_13625: PS417_13625 - cytochrome B561, at 2,999,595 to 3,000,137
_13625
PS417_13635: PS417_13635 - D-ribose transporter ATP-binding protein, at 3,000,302 to 3,001,834
_13635
PS417_13640: PS417_13640 - ribose ABC transporter permease, at 3,001,827 to 3,002,804
_13640
Position (kb)
3000
3001
3002 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2999.357 kb on - strand at 2999.622 kb on + strand at 2999.622 kb on + strand at 2999.623 kb on - strand at 2999.679 kb on + strand, within PS417_13625 at 2999.680 kb on - strand, within PS417_13625 at 2999.867 kb on + strand, within PS417_13625 at 2999.868 kb on - strand, within PS417_13625 at 2999.883 kb on + strand, within PS417_13625 at 2999.884 kb on - strand, within PS417_13625 at 3000.217 kb on + strand at 3000.218 kb on - strand at 3000.894 kb on - strand, within PS417_13635 at 3000.894 kb on - strand, within PS417_13635 at 3000.963 kb on - strand, within PS417_13635 at 3001.043 kb on + strand, within PS417_13635 at 3001.043 kb on + strand, within PS417_13635 at 3001.065 kb on - strand, within PS417_13635 at 3001.067 kb on - strand, within PS417_13635 at 3001.771 kb on + strand at 3002.418 kb on + strand, within PS417_13640 at 3002.545 kb on + strand, within PS417_13640 at 3002.730 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,999,357 - -1.1 2,999,622 + -1.4 2,999,622 + -1.3 2,999,623 - +0.9 2,999,679 + PS417_13625 0.15 +1.6 2,999,680 - PS417_13625 0.16 +0.2 2,999,867 + PS417_13625 0.50 -2.0 2,999,868 - PS417_13625 0.50 -0.5 2,999,883 + PS417_13625 0.53 -1.1 2,999,884 - PS417_13625 0.53 +1.9 3,000,217 + +0.5 3,000,218 - +0.3 3,000,894 - PS417_13635 0.39 +0.2 3,000,894 - PS417_13635 0.39 +1.6 3,000,963 - PS417_13635 0.43 +0.9 3,001,043 + PS417_13635 0.48 +0.9 3,001,043 + PS417_13635 0.48 -0.2 3,001,065 - PS417_13635 0.50 -0.0 3,001,067 - PS417_13635 0.50 +0.5 3,001,771 + -0.6 3,002,418 + PS417_13640 0.60 -0.4 3,002,545 + PS417_13640 0.73 +0.7 3,002,730 + -0.7
Or see this region's nucleotide sequence