Strain Fitness in Pseudomonas simiae WCS417 around PS417_13020

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13015 and PS417_13020 are separated by 308 nucleotidesPS417_13020 and PS417_13025 are separated by 151 nucleotidesPS417_13025 and PS417_13030 are separated by 173 nucleotides PS417_13015: PS417_13015 - 6-hydroxynicotinate 3-monooxygenase, at 2,842,749 to 2,843,882 _13015 PS417_13020: PS417_13020 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 2,844,191 to 2,845,243 _13020 PS417_13025: PS417_13025 - MarR family transcriptional regulator, at 2,845,395 to 2,845,829 _13025 PS417_13030: PS417_13030 - (2Fe-2S)-binding protein, at 2,846,003 to 2,846,485 _13030 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2843.221 kb on + strand, within PS417_13015at 2843.222 kb on - strand, within PS417_13015at 2843.222 kb on - strand, within PS417_13015at 2843.224 kb on + strand, within PS417_13015at 2843.224 kb on + strand, within PS417_13015at 2843.224 kb on + strand, within PS417_13015at 2843.227 kb on + strand, within PS417_13015at 2843.228 kb on - strand, within PS417_13015at 2843.252 kb on - strand, within PS417_13015at 2843.252 kb on - strand, within PS417_13015at 2843.252 kb on - strand, within PS417_13015at 2843.368 kb on + strand, within PS417_13015at 2843.447 kb on - strand, within PS417_13015at 2843.590 kb on + strand, within PS417_13015at 2843.591 kb on - strand, within PS417_13015at 2843.785 kb on + strandat 2843.785 kb on + strandat 2843.786 kb on - strandat 2843.815 kb on - strandat 2844.704 kb on + strand, within PS417_13020at 2844.854 kb on + strand, within PS417_13020at 2844.854 kb on + strandat 2844.855 kb on - strand, within PS417_13020at 2844.930 kb on - strand, within PS417_13020at 2844.941 kb on + strand, within PS417_13020at 2844.941 kb on + strand, within PS417_13020at 2844.941 kb on + strand, within PS417_13020at 2844.942 kb on - strand, within PS417_13020at 2844.942 kb on - strand, within PS417_13020at 2844.942 kb on - strand, within PS417_13020at 2844.951 kb on - strand, within PS417_13020at 2844.972 kb on - strand, within PS417_13020at 2845.150 kb on + strandat 2845.175 kb on + strandat 2845.176 kb on - strandat 2845.176 kb on - strandat 2845.176 kb on - strandat 2845.866 kb on + strandat 2845.896 kb on - strandat 2845.896 kb on - strandat 2845.967 kb on + strandat 2845.974 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,843,221 + PS417_13015 0.42 +1.8
2,843,222 - PS417_13015 0.42 -2.3
2,843,222 - PS417_13015 0.42 -0.1
2,843,224 + PS417_13015 0.42 -2.4
2,843,224 + PS417_13015 0.42 -1.2
2,843,224 + PS417_13015 0.42 -0.5
2,843,227 + PS417_13015 0.42 -3.1
2,843,228 - PS417_13015 0.42 -0.3
2,843,252 - PS417_13015 0.44 -1.9
2,843,252 - PS417_13015 0.44 +1.6
2,843,252 - PS417_13015 0.44 -1.9
2,843,368 + PS417_13015 0.55 +0.7
2,843,447 - PS417_13015 0.62 +0.1
2,843,590 + PS417_13015 0.74 -0.2
2,843,591 - PS417_13015 0.74 -0.4
2,843,785 + +1.9
2,843,785 + +0.2
2,843,786 - -1.4
2,843,815 - -0.2
2,844,704 + PS417_13020 0.49 +0.7
2,844,854 + PS417_13020 0.63 +0.7
2,844,854 + +1.9
2,844,855 - PS417_13020 0.63 -1.8
2,844,930 - PS417_13020 0.70 -0.2
2,844,941 + PS417_13020 0.71 -2.3
2,844,941 + PS417_13020 0.71 +1.9
2,844,941 + PS417_13020 0.71 +1.5
2,844,942 - PS417_13020 0.71 +1.0
2,844,942 - PS417_13020 0.71 +0.7
2,844,942 - PS417_13020 0.71 +1.4
2,844,951 - PS417_13020 0.72 +0.4
2,844,972 - PS417_13020 0.74 -0.8
2,845,150 + +0.1
2,845,175 + -2.2
2,845,176 - -0.4
2,845,176 - -0.6
2,845,176 - +0.2
2,845,866 + -0.2
2,845,896 - -0.8
2,845,896 - -3.0
2,845,967 + +1.2
2,845,974 + -0.4

Or see this region's nucleotide sequence