Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01135 and PS417_01140 are separated by 14 nucleotides PS417_01140 and PS417_01145 overlap by 4 nucleotides PS417_01145 and PS417_01150 are separated by 16 nucleotides
PS417_01135: PS417_01135 - taurine dioxygenase, at 249,832 to 250,668
_01135
PS417_01140: PS417_01140 - taurine ABC transporter permease, at 250,683 to 251,519
_01140
PS417_01145: PS417_01145 - taurine transporter ATP-binding subunit, at 251,516 to 252,295
_01145
PS417_01150: PS417_01150 - taurine ABC transporter substrate-binding protein, at 252,312 to 253,289
_01150
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1
2 at 250.651 kb on - strand at 250.668 kb on + strand at 250.669 kb on - strand at 250.771 kb on - strand, within PS417_01140 at 250.771 kb on - strand, within PS417_01140 at 251.146 kb on + strand, within PS417_01140 at 251.623 kb on - strand, within PS417_01145 at 252.237 kb on - strand at 252.284 kb on + strand at 252.284 kb on + strand at 252.303 kb on - strand at 252.340 kb on + strand at 252.340 kb on + strand at 252.341 kb on - strand at 252.341 kb on - strand at 252.349 kb on + strand at 252.419 kb on + strand, within PS417_01150 at 252.584 kb on - strand, within PS417_01150 at 252.757 kb on + strand, within PS417_01150 at 252.758 kb on - strand at 252.758 kb on - strand, within PS417_01150 at 252.758 kb on - strand, within PS417_01150 at 252.825 kb on + strand, within PS417_01150 at 253.185 kb on + strand, within PS417_01150
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 250,651 - +2.5 250,668 + -0.7 250,669 - -2.0 250,771 - PS417_01140 0.11 -0.0 250,771 - PS417_01140 0.11 -1.6 251,146 + PS417_01140 0.55 -2.7 251,623 - PS417_01145 0.14 -2.3 252,237 - -1.8 252,284 + +0.3 252,284 + +0.1 252,303 - -1.2 252,340 + +2.2 252,340 + -2.4 252,341 - +1.2 252,341 - +0.6 252,349 + +1.5 252,419 + PS417_01150 0.11 -2.6 252,584 - PS417_01150 0.28 -0.2 252,757 + PS417_01150 0.46 -0.6 252,758 - +0.1 252,758 - PS417_01150 0.46 -0.2 252,758 - PS417_01150 0.46 -0.1 252,825 + PS417_01150 0.52 +0.8 253,185 + PS417_01150 0.89 -0.1
Or see this region's nucleotide sequence