Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11285 and PS417_11290 overlap by 8 nucleotides PS417_11290 and PS417_11295 overlap by 4 nucleotides PS417_11295 and PS417_11300 are separated by 352 nucleotides
PS417_11285: PS417_11285 - general secretion pathway protein GspL, at 2,415,251 to 2,416,312
_11285
PS417_11290: PS417_11290 - general secretion pathway protein GspM, at 2,416,305 to 2,416,817
_11290
PS417_11295: PS417_11295 - general secretion pathway protein GspD, at 2,416,814 to 2,419,108
_11295
PS417_11300: PS417_11300 - general secretion pathway protein GspE, at 2,419,461 to 2,420,879
_11300
Position (kb)
2416
2417
2418
2419
2420 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2416.294 kb on - strand at 2416.484 kb on - strand, within PS417_11290 at 2416.949 kb on - strand at 2417.082 kb on + strand, within PS417_11295 at 2417.226 kb on - strand, within PS417_11295 at 2417.369 kb on - strand, within PS417_11295 at 2417.784 kb on - strand, within PS417_11295 at 2417.784 kb on - strand, within PS417_11295 at 2417.920 kb on + strand, within PS417_11295 at 2417.921 kb on - strand, within PS417_11295 at 2418.739 kb on + strand, within PS417_11295 at 2418.739 kb on + strand, within PS417_11295 at 2418.911 kb on + strand at 2418.912 kb on - strand at 2418.943 kb on + strand at 2418.944 kb on - strand at 2418.967 kb on + strand at 2419.003 kb on + strand at 2419.121 kb on + strand at 2419.121 kb on + strand at 2419.122 kb on - strand at 2419.122 kb on - strand at 2419.122 kb on - strand at 2419.361 kb on + strand at 2419.436 kb on + strand at 2419.437 kb on - strand at 2419.437 kb on - strand at 2419.437 kb on - strand at 2419.437 kb on - strand at 2419.437 kb on - strand at 2419.437 kb on - strand at 2419.468 kb on + strand at 2419.469 kb on - strand at 2419.531 kb on + strand at 2419.703 kb on - strand, within PS417_11300 at 2419.703 kb on - strand, within PS417_11300 at 2419.728 kb on - strand, within PS417_11300 at 2419.728 kb on - strand, within PS417_11300
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,416,294 - +1.5 2,416,484 - PS417_11290 0.35 -0.1 2,416,949 - +0.1 2,417,082 + PS417_11295 0.12 -0.1 2,417,226 - PS417_11295 0.18 -0.7 2,417,369 - PS417_11295 0.24 -0.6 2,417,784 - PS417_11295 0.42 -2.8 2,417,784 - PS417_11295 0.42 -0.1 2,417,920 + PS417_11295 0.48 -1.5 2,417,921 - PS417_11295 0.48 -2.8 2,418,739 + PS417_11295 0.84 -0.7 2,418,739 + PS417_11295 0.84 -0.9 2,418,911 + +2.2 2,418,912 - +0.8 2,418,943 + -1.8 2,418,944 - +1.6 2,418,967 + -0.1 2,419,003 + -0.1 2,419,121 + +0.7 2,419,121 + -1.1 2,419,122 - -0.4 2,419,122 - -1.4 2,419,122 - +1.0 2,419,361 + -1.9 2,419,436 + -1.7 2,419,437 - +0.5 2,419,437 - -0.5 2,419,437 - -3.5 2,419,437 - -2.2 2,419,437 - +0.7 2,419,437 - -0.2 2,419,468 + -0.5 2,419,469 - -0.3 2,419,531 + +0.2 2,419,703 - PS417_11300 0.17 -1.0 2,419,703 - PS417_11300 0.17 -1.3 2,419,728 - PS417_11300 0.19 -0.4 2,419,728 - PS417_11300 0.19 -2.2
Or see this region's nucleotide sequence