Strain Fitness in Pseudomonas simiae WCS417 around PS417_11295

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11285 and PS417_11290 overlap by 8 nucleotidesPS417_11290 and PS417_11295 overlap by 4 nucleotidesPS417_11295 and PS417_11300 are separated by 352 nucleotides PS417_11285: PS417_11285 - general secretion pathway protein GspL, at 2,415,251 to 2,416,312 _11285 PS417_11290: PS417_11290 - general secretion pathway protein GspM, at 2,416,305 to 2,416,817 _11290 PS417_11295: PS417_11295 - general secretion pathway protein GspD, at 2,416,814 to 2,419,108 _11295 PS417_11300: PS417_11300 - general secretion pathway protein GspE, at 2,419,461 to 2,420,879 _11300 Position (kb) 2416 2417 2418 2419 2420Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2416.294 kb on - strandat 2416.484 kb on - strand, within PS417_11290at 2416.949 kb on - strandat 2417.082 kb on + strand, within PS417_11295at 2417.226 kb on - strand, within PS417_11295at 2417.369 kb on - strand, within PS417_11295at 2417.784 kb on - strand, within PS417_11295at 2417.784 kb on - strand, within PS417_11295at 2417.920 kb on + strand, within PS417_11295at 2417.921 kb on - strand, within PS417_11295at 2418.739 kb on + strand, within PS417_11295at 2418.739 kb on + strand, within PS417_11295at 2418.911 kb on + strandat 2418.912 kb on - strandat 2418.943 kb on + strandat 2418.944 kb on - strandat 2418.967 kb on + strandat 2419.003 kb on + strandat 2419.121 kb on + strandat 2419.121 kb on + strandat 2419.122 kb on - strandat 2419.122 kb on - strandat 2419.122 kb on - strandat 2419.361 kb on + strandat 2419.436 kb on + strandat 2419.437 kb on - strandat 2419.437 kb on - strandat 2419.437 kb on - strandat 2419.437 kb on - strandat 2419.437 kb on - strandat 2419.437 kb on - strandat 2419.468 kb on + strandat 2419.469 kb on - strandat 2419.531 kb on + strandat 2419.703 kb on - strand, within PS417_11300at 2419.703 kb on - strand, within PS417_11300at 2419.728 kb on - strand, within PS417_11300at 2419.728 kb on - strand, within PS417_11300

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,416,294 - +1.5
2,416,484 - PS417_11290 0.35 -0.1
2,416,949 - +0.1
2,417,082 + PS417_11295 0.12 -0.1
2,417,226 - PS417_11295 0.18 -0.7
2,417,369 - PS417_11295 0.24 -0.6
2,417,784 - PS417_11295 0.42 -2.8
2,417,784 - PS417_11295 0.42 -0.1
2,417,920 + PS417_11295 0.48 -1.5
2,417,921 - PS417_11295 0.48 -2.8
2,418,739 + PS417_11295 0.84 -0.7
2,418,739 + PS417_11295 0.84 -0.9
2,418,911 + +2.2
2,418,912 - +0.8
2,418,943 + -1.8
2,418,944 - +1.6
2,418,967 + -0.1
2,419,003 + -0.1
2,419,121 + +0.7
2,419,121 + -1.1
2,419,122 - -0.4
2,419,122 - -1.4
2,419,122 - +1.0
2,419,361 + -1.9
2,419,436 + -1.7
2,419,437 - +0.5
2,419,437 - -0.5
2,419,437 - -3.5
2,419,437 - -2.2
2,419,437 - +0.7
2,419,437 - -0.2
2,419,468 + -0.5
2,419,469 - -0.3
2,419,531 + +0.2
2,419,703 - PS417_11300 0.17 -1.0
2,419,703 - PS417_11300 0.17 -1.3
2,419,728 - PS417_11300 0.19 -0.4
2,419,728 - PS417_11300 0.19 -2.2

Or see this region's nucleotide sequence