Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01040 and PS417_01045 overlap by 4 nucleotides PS417_01045 and PS417_01050 overlap by 4 nucleotides
PS417_01040: PS417_01040 - RND transporter, at 226,180 to 227,262
_01040
PS417_01045: PS417_01045 - RND transporter, at 227,259 to 228,329
_01045
PS417_01050: PS417_01050 - ACR family transporter, at 228,326 to 231,391
_01050
Position (kb) 227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 226.339 kb on - strand, within PS417_01040 at 226.542 kb on - strand, within PS417_01040 at 226.570 kb on + strand, within PS417_01040 at 226.570 kb on + strand, within PS417_01040 at 226.570 kb on + strand, within PS417_01040 at 226.571 kb on - strand, within PS417_01040 at 226.746 kb on - strand, within PS417_01040 at 226.811 kb on - strand, within PS417_01040 at 226.811 kb on - strand, within PS417_01040 at 226.811 kb on - strand, within PS417_01040 at 226.929 kb on + strand, within PS417_01040 at 227.583 kb on + strand, within PS417_01045 at 227.583 kb on + strand, within PS417_01045 at 227.583 kb on + strand, within PS417_01045 at 227.584 kb on - strand, within PS417_01045 at 227.584 kb on - strand at 228.384 kb on - strand at 228.423 kb on - strand at 228.573 kb on - strand at 228.573 kb on - strand at 228.751 kb on - strand, within PS417_01050 at 228.751 kb on - strand, within PS417_01050 at 228.764 kb on + strand, within PS417_01050 at 228.893 kb on + strand, within PS417_01050 at 229.094 kb on + strand, within PS417_01050 at 229.130 kb on + strand, within PS417_01050 at 229.130 kb on + strand, within PS417_01050 at 229.131 kb on - strand, within PS417_01050
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 226,339 - PS417_01040 0.15 -0.1 226,542 - PS417_01040 0.33 -0.7 226,570 + PS417_01040 0.36 +0.0 226,570 + PS417_01040 0.36 -0.2 226,570 + PS417_01040 0.36 -2.2 226,571 - PS417_01040 0.36 +0.2 226,746 - PS417_01040 0.52 -0.6 226,811 - PS417_01040 0.58 -2.1 226,811 - PS417_01040 0.58 -0.9 226,811 - PS417_01040 0.58 -0.4 226,929 + PS417_01040 0.69 -1.4 227,583 + PS417_01045 0.30 +0.3 227,583 + PS417_01045 0.30 -1.0 227,583 + PS417_01045 0.30 -1.4 227,584 - PS417_01045 0.30 -1.4 227,584 - +3.7 228,384 - -1.5 228,423 - -1.2 228,573 - -1.5 228,573 - +2.0 228,751 - PS417_01050 0.14 -3.0 228,751 - PS417_01050 0.14 +0.8 228,764 + PS417_01050 0.14 +1.3 228,893 + PS417_01050 0.18 +1.1 229,094 + PS417_01050 0.25 +0.0 229,130 + PS417_01050 0.26 -0.6 229,130 + PS417_01050 0.26 -1.5 229,131 - PS417_01050 0.26 -0.7
Or see this region's nucleotide sequence