Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01035 and PS417_01040 are separated by 121 nucleotides PS417_01040 and PS417_01045 overlap by 4 nucleotides
PS417_01035: PS417_01035 - ATP-binding protein, at 224,898 to 226,058
_01035
PS417_01040: PS417_01040 - RND transporter, at 226,180 to 227,262
_01040
PS417_01045: PS417_01045 - RND transporter, at 227,259 to 228,329
_01045
Position (kb) 226
227
228 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 225.184 kb on + strand, within PS417_01035 at 225.553 kb on + strand, within PS417_01035 at 225.553 kb on + strand, within PS417_01035 at 225.554 kb on - strand, within PS417_01035 at 225.554 kb on - strand, within PS417_01035 at 226.110 kb on + strand at 226.125 kb on + strand at 226.126 kb on - strand at 226.339 kb on - strand, within PS417_01040 at 226.542 kb on - strand, within PS417_01040 at 226.570 kb on + strand, within PS417_01040 at 226.570 kb on + strand, within PS417_01040 at 226.570 kb on + strand, within PS417_01040 at 226.571 kb on - strand, within PS417_01040 at 226.746 kb on - strand, within PS417_01040 at 226.811 kb on - strand, within PS417_01040 at 226.811 kb on - strand, within PS417_01040 at 226.811 kb on - strand, within PS417_01040 at 226.929 kb on + strand, within PS417_01040 at 227.583 kb on + strand, within PS417_01045 at 227.583 kb on + strand, within PS417_01045 at 227.583 kb on + strand, within PS417_01045 at 227.584 kb on - strand, within PS417_01045 at 227.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 225,184 + PS417_01035 0.25 -0.3 225,553 + PS417_01035 0.56 +3.5 225,553 + PS417_01035 0.56 +1.1 225,554 - PS417_01035 0.57 +0.7 225,554 - PS417_01035 0.57 -0.1 226,110 + -1.2 226,125 + +0.6 226,126 - +0.2 226,339 - PS417_01040 0.15 -0.1 226,542 - PS417_01040 0.33 -0.7 226,570 + PS417_01040 0.36 +0.0 226,570 + PS417_01040 0.36 -0.2 226,570 + PS417_01040 0.36 -2.2 226,571 - PS417_01040 0.36 +0.2 226,746 - PS417_01040 0.52 -0.6 226,811 - PS417_01040 0.58 -2.1 226,811 - PS417_01040 0.58 -0.9 226,811 - PS417_01040 0.58 -0.4 226,929 + PS417_01040 0.69 -1.4 227,583 + PS417_01045 0.30 +0.3 227,583 + PS417_01045 0.30 -1.0 227,583 + PS417_01045 0.30 -1.4 227,584 - PS417_01045 0.30 -1.4 227,584 - +3.7
Or see this region's nucleotide sequence