Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09780 and PS417_09785 overlap by 1 nucleotides PS417_09785 and PS417_09790 overlap by 8 nucleotides PS417_09790 and PS417_09795 are separated by 14 nucleotides
PS417_09780: PS417_09780 - type IV secretion protein Rhs, at 2,119,845 to 2,121,863
_09780
PS417_09785: PS417_09785 - hypothetical protein, at 2,121,863 to 2,122,699
_09785
PS417_09790: PS417_09790 - hypothetical protein, at 2,122,692 to 2,123,468
_09790
PS417_09795: PS417_09795 - lipase, at 2,123,483 to 2,125,633
_09795
Position (kb)
2121
2122
2123 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2120.922 kb on - strand, within PS417_09780 at 2120.997 kb on + strand, within PS417_09780 at 2120.997 kb on + strand, within PS417_09780 at 2120.998 kb on - strand, within PS417_09780 at 2120.998 kb on - strand at 2121.050 kb on + strand, within PS417_09780 at 2121.050 kb on + strand, within PS417_09780 at 2121.051 kb on - strand, within PS417_09780 at 2121.216 kb on + strand, within PS417_09780 at 2121.216 kb on + strand, within PS417_09780 at 2121.217 kb on - strand, within PS417_09780 at 2121.294 kb on + strand, within PS417_09780 at 2121.294 kb on + strand, within PS417_09780 at 2121.294 kb on + strand, within PS417_09780 at 2121.294 kb on + strand, within PS417_09780 at 2121.295 kb on - strand, within PS417_09780 at 2121.295 kb on - strand, within PS417_09780 at 2121.328 kb on - strand, within PS417_09780 at 2121.496 kb on - strand, within PS417_09780 at 2121.737 kb on + strand at 2121.738 kb on - strand at 2121.801 kb on + strand at 2121.802 kb on - strand at 2121.998 kb on + strand, within PS417_09785 at 2122.078 kb on - strand, within PS417_09785 at 2122.078 kb on - strand, within PS417_09785 at 2122.092 kb on + strand, within PS417_09785 at 2122.304 kb on + strand, within PS417_09785 at 2122.427 kb on - strand, within PS417_09785 at 2122.436 kb on + strand, within PS417_09785 at 2122.450 kb on - strand, within PS417_09785 at 2122.450 kb on - strand, within PS417_09785 at 2122.450 kb on - strand, within PS417_09785 at 2122.697 kb on + strand at 2123.000 kb on + strand, within PS417_09790 at 2123.004 kb on + strand, within PS417_09790 at 2123.004 kb on + strand at 2123.005 kb on - strand, within PS417_09790 at 2123.005 kb on - strand, within PS417_09790 at 2123.005 kb on - strand, within PS417_09790 at 2123.005 kb on - strand, within PS417_09790 at 2123.005 kb on - strand, within PS417_09790 at 2123.005 kb on - strand, within PS417_09790 at 2123.028 kb on - strand, within PS417_09790 at 2123.254 kb on + strand, within PS417_09790 at 2123.355 kb on - strand, within PS417_09790 at 2123.360 kb on + strand, within PS417_09790 at 2123.360 kb on + strand, within PS417_09790 at 2123.521 kb on + strand at 2123.612 kb on + strand at 2123.613 kb on - strand at 2123.627 kb on - strand at 2123.643 kb on - strand at 2123.680 kb on - strand at 2123.686 kb on + strand at 2123.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,120,922 - PS417_09780 0.53 -0.6 2,120,997 + PS417_09780 0.57 -1.6 2,120,997 + PS417_09780 0.57 -2.3 2,120,998 - PS417_09780 0.57 +1.5 2,120,998 - -1.0 2,121,050 + PS417_09780 0.60 +0.5 2,121,050 + PS417_09780 0.60 +0.7 2,121,051 - PS417_09780 0.60 +0.3 2,121,216 + PS417_09780 0.68 -0.2 2,121,216 + PS417_09780 0.68 -1.5 2,121,217 - PS417_09780 0.68 -0.1 2,121,294 + PS417_09780 0.72 -0.3 2,121,294 + PS417_09780 0.72 +0.2 2,121,294 + PS417_09780 0.72 +0.9 2,121,294 + PS417_09780 0.72 +0.0 2,121,295 - PS417_09780 0.72 -0.0 2,121,295 - PS417_09780 0.72 +0.1 2,121,328 - PS417_09780 0.73 -0.2 2,121,496 - PS417_09780 0.82 -2.2 2,121,737 + -0.9 2,121,738 - -0.6 2,121,801 + +1.2 2,121,802 - +2.0 2,121,998 + PS417_09785 0.16 +0.8 2,122,078 - PS417_09785 0.26 +0.2 2,122,078 - PS417_09785 0.26 +0.7 2,122,092 + PS417_09785 0.27 -0.5 2,122,304 + PS417_09785 0.53 +0.6 2,122,427 - PS417_09785 0.67 -2.4 2,122,436 + PS417_09785 0.68 +2.0 2,122,450 - PS417_09785 0.70 +0.4 2,122,450 - PS417_09785 0.70 +1.5 2,122,450 - PS417_09785 0.70 +1.2 2,122,697 + +1.5 2,123,000 + PS417_09790 0.40 +1.5 2,123,004 + PS417_09790 0.40 +2.5 2,123,004 + +0.4 2,123,005 - PS417_09790 0.40 -0.4 2,123,005 - PS417_09790 0.40 +1.8 2,123,005 - PS417_09790 0.40 -0.5 2,123,005 - PS417_09790 0.40 -1.9 2,123,005 - PS417_09790 0.40 -0.3 2,123,005 - PS417_09790 0.40 -1.1 2,123,028 - PS417_09790 0.43 -1.7 2,123,254 + PS417_09790 0.72 +0.7 2,123,355 - PS417_09790 0.85 +1.9 2,123,360 + PS417_09790 0.86 -0.6 2,123,360 + PS417_09790 0.86 +1.1 2,123,521 + +0.2 2,123,612 + +1.3 2,123,613 - +0.7 2,123,627 - +0.1 2,123,643 - +1.4 2,123,680 - -2.3 2,123,686 + +1.1 2,123,687 - -0.2
Or see this region's nucleotide sequence