Strain Fitness in Pseudomonas simiae WCS417 around PS417_09785

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09780 and PS417_09785 overlap by 1 nucleotidesPS417_09785 and PS417_09790 overlap by 8 nucleotidesPS417_09790 and PS417_09795 are separated by 14 nucleotides PS417_09780: PS417_09780 - type IV secretion protein Rhs, at 2,119,845 to 2,121,863 _09780 PS417_09785: PS417_09785 - hypothetical protein, at 2,121,863 to 2,122,699 _09785 PS417_09790: PS417_09790 - hypothetical protein, at 2,122,692 to 2,123,468 _09790 PS417_09795: PS417_09795 - lipase, at 2,123,483 to 2,125,633 _09795 Position (kb) 2121 2122 2123Strain fitness (log2 ratio) -2 -1 0 1 2at 2120.922 kb on - strand, within PS417_09780at 2120.997 kb on + strand, within PS417_09780at 2120.997 kb on + strand, within PS417_09780at 2120.998 kb on - strand, within PS417_09780at 2120.998 kb on - strandat 2121.050 kb on + strand, within PS417_09780at 2121.050 kb on + strand, within PS417_09780at 2121.051 kb on - strand, within PS417_09780at 2121.216 kb on + strand, within PS417_09780at 2121.216 kb on + strand, within PS417_09780at 2121.217 kb on - strand, within PS417_09780at 2121.294 kb on + strand, within PS417_09780at 2121.294 kb on + strand, within PS417_09780at 2121.294 kb on + strand, within PS417_09780at 2121.294 kb on + strand, within PS417_09780at 2121.295 kb on - strand, within PS417_09780at 2121.295 kb on - strand, within PS417_09780at 2121.328 kb on - strand, within PS417_09780at 2121.496 kb on - strand, within PS417_09780at 2121.737 kb on + strandat 2121.738 kb on - strandat 2121.801 kb on + strandat 2121.802 kb on - strandat 2121.998 kb on + strand, within PS417_09785at 2122.078 kb on - strand, within PS417_09785at 2122.078 kb on - strand, within PS417_09785at 2122.092 kb on + strand, within PS417_09785at 2122.304 kb on + strand, within PS417_09785at 2122.427 kb on - strand, within PS417_09785at 2122.436 kb on + strand, within PS417_09785at 2122.450 kb on - strand, within PS417_09785at 2122.450 kb on - strand, within PS417_09785at 2122.450 kb on - strand, within PS417_09785at 2122.697 kb on + strandat 2123.000 kb on + strand, within PS417_09790at 2123.004 kb on + strand, within PS417_09790at 2123.004 kb on + strandat 2123.005 kb on - strand, within PS417_09790at 2123.005 kb on - strand, within PS417_09790at 2123.005 kb on - strand, within PS417_09790at 2123.005 kb on - strand, within PS417_09790at 2123.005 kb on - strand, within PS417_09790at 2123.005 kb on - strand, within PS417_09790at 2123.028 kb on - strand, within PS417_09790at 2123.254 kb on + strand, within PS417_09790at 2123.355 kb on - strand, within PS417_09790at 2123.360 kb on + strand, within PS417_09790at 2123.360 kb on + strand, within PS417_09790at 2123.521 kb on + strandat 2123.612 kb on + strandat 2123.613 kb on - strandat 2123.627 kb on - strandat 2123.643 kb on - strandat 2123.680 kb on - strandat 2123.686 kb on + strandat 2123.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,120,922 - PS417_09780 0.53 -0.6
2,120,997 + PS417_09780 0.57 -1.6
2,120,997 + PS417_09780 0.57 -2.3
2,120,998 - PS417_09780 0.57 +1.5
2,120,998 - -1.0
2,121,050 + PS417_09780 0.60 +0.5
2,121,050 + PS417_09780 0.60 +0.7
2,121,051 - PS417_09780 0.60 +0.3
2,121,216 + PS417_09780 0.68 -0.2
2,121,216 + PS417_09780 0.68 -1.5
2,121,217 - PS417_09780 0.68 -0.1
2,121,294 + PS417_09780 0.72 -0.3
2,121,294 + PS417_09780 0.72 +0.2
2,121,294 + PS417_09780 0.72 +0.9
2,121,294 + PS417_09780 0.72 +0.0
2,121,295 - PS417_09780 0.72 -0.0
2,121,295 - PS417_09780 0.72 +0.1
2,121,328 - PS417_09780 0.73 -0.2
2,121,496 - PS417_09780 0.82 -2.2
2,121,737 + -0.9
2,121,738 - -0.6
2,121,801 + +1.2
2,121,802 - +2.0
2,121,998 + PS417_09785 0.16 +0.8
2,122,078 - PS417_09785 0.26 +0.2
2,122,078 - PS417_09785 0.26 +0.7
2,122,092 + PS417_09785 0.27 -0.5
2,122,304 + PS417_09785 0.53 +0.6
2,122,427 - PS417_09785 0.67 -2.4
2,122,436 + PS417_09785 0.68 +2.0
2,122,450 - PS417_09785 0.70 +0.4
2,122,450 - PS417_09785 0.70 +1.5
2,122,450 - PS417_09785 0.70 +1.2
2,122,697 + +1.5
2,123,000 + PS417_09790 0.40 +1.5
2,123,004 + PS417_09790 0.40 +2.5
2,123,004 + +0.4
2,123,005 - PS417_09790 0.40 -0.4
2,123,005 - PS417_09790 0.40 +1.8
2,123,005 - PS417_09790 0.40 -0.5
2,123,005 - PS417_09790 0.40 -1.9
2,123,005 - PS417_09790 0.40 -0.3
2,123,005 - PS417_09790 0.40 -1.1
2,123,028 - PS417_09790 0.43 -1.7
2,123,254 + PS417_09790 0.72 +0.7
2,123,355 - PS417_09790 0.85 +1.9
2,123,360 + PS417_09790 0.86 -0.6
2,123,360 + PS417_09790 0.86 +1.1
2,123,521 + +0.2
2,123,612 + +1.3
2,123,613 - +0.7
2,123,627 - +0.1
2,123,643 - +1.4
2,123,680 - -2.3
2,123,686 + +1.1
2,123,687 - -0.2

Or see this region's nucleotide sequence