Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09690 and PS417_09695 are separated by 253 nucleotides PS417_09695 and PS417_09700 are separated by 442 nucleotides
PS417_09690: PS417_09690 - sugar dehydrogenase, at 2,101,237 to 2,102,037
_09690
PS417_09695: PS417_09695 - hydrolase, at 2,102,291 to 2,103,013
_09695
PS417_09700: PS417_09700 - transaldolase, at 2,103,456 to 2,104,262
_09700
Position (kb)
2102
2103
2104 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2101.308 kb on - strand at 2101.544 kb on + strand, within PS417_09690 at 2101.926 kb on - strand, within PS417_09690 at 2101.926 kb on - strand, within PS417_09690 at 2101.926 kb on - strand, within PS417_09690 at 2102.012 kb on - strand at 2102.280 kb on - strand at 2102.347 kb on - strand at 2102.360 kb on - strand at 2102.564 kb on - strand, within PS417_09695 at 2102.564 kb on - strand, within PS417_09695 at 2102.715 kb on + strand, within PS417_09695 at 2102.994 kb on + strand at 2103.016 kb on + strand at 2103.017 kb on - strand at 2103.172 kb on - strand at 2103.172 kb on - strand at 2103.174 kb on - strand at 2103.175 kb on + strand at 2103.175 kb on + strand at 2103.175 kb on + strand at 2103.176 kb on - strand at 2103.176 kb on - strand at 2103.276 kb on + strand at 2103.276 kb on + strand at 2103.276 kb on + strand at 2103.277 kb on - strand at 2103.277 kb on - strand at 2103.337 kb on - strand at 2103.337 kb on - strand at 2103.446 kb on + strand at 2103.681 kb on + strand, within PS417_09700 at 2103.799 kb on - strand at 2103.799 kb on - strand, within PS417_09700 at 2103.862 kb on + strand, within PS417_09700 at 2103.863 kb on - strand, within PS417_09700 at 2103.863 kb on - strand, within PS417_09700 at 2104.001 kb on - strand, within PS417_09700
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,101,308 - -2.4 2,101,544 + PS417_09690 0.38 +0.2 2,101,926 - PS417_09690 0.86 +0.1 2,101,926 - PS417_09690 0.86 -0.4 2,101,926 - PS417_09690 0.86 -3.4 2,102,012 - -2.1 2,102,280 - +0.0 2,102,347 - -2.2 2,102,360 - -3.7 2,102,564 - PS417_09695 0.38 -3.2 2,102,564 - PS417_09695 0.38 -3.3 2,102,715 + PS417_09695 0.59 -0.3 2,102,994 + -0.8 2,103,016 + +0.3 2,103,017 - -3.0 2,103,172 - -2.6 2,103,172 - -3.0 2,103,174 - -3.2 2,103,175 + -2.2 2,103,175 + -0.2 2,103,175 + -0.7 2,103,176 - -1.9 2,103,176 - -3.6 2,103,276 + -3.7 2,103,276 + +0.8 2,103,276 + +0.0 2,103,277 - -4.3 2,103,277 - -3.4 2,103,337 - -1.1 2,103,337 - -4.4 2,103,446 + +0.9 2,103,681 + PS417_09700 0.28 +0.5 2,103,799 - -1.0 2,103,799 - PS417_09700 0.43 -2.5 2,103,862 + PS417_09700 0.50 +1.7 2,103,863 - PS417_09700 0.50 -3.3 2,103,863 - PS417_09700 0.50 -3.0 2,104,001 - PS417_09700 0.68 -2.3
Or see this region's nucleotide sequence