Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09350 and PS417_09355 overlap by 4 nucleotides PS417_09355 and PS417_09360 are separated by 179 nucleotides PS417_09360 and PS417_09365 are separated by 347 nucleotides
PS417_09350: PS417_09350 - ABC transporter permease, at 2,028,561 to 2,029,397
_09350
PS417_09355: PS417_09355 - hypothetical protein, at 2,029,394 to 2,030,200
_09355
PS417_09360: PS417_09360 - ABC transporter substrate-binding protein, at 2,030,380 to 2,031,456
_09360
PS417_09365: PS417_09365 - MFS transporter, at 2,031,804 to 2,032,517
_09365
Position (kb)
2030
2031
2032 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2029.386 kb on - strand at 2029.636 kb on - strand, within PS417_09355 at 2029.677 kb on + strand at 2030.353 kb on + strand at 2030.381 kb on + strand at 2030.381 kb on + strand at 2030.392 kb on + strand at 2030.393 kb on - strand at 2030.395 kb on + strand at 2030.396 kb on - strand at 2030.487 kb on - strand at 2030.487 kb on - strand at 2030.606 kb on + strand, within PS417_09360 at 2030.607 kb on - strand, within PS417_09360 at 2030.708 kb on + strand, within PS417_09360 at 2030.738 kb on + strand, within PS417_09360 at 2030.739 kb on - strand, within PS417_09360 at 2030.911 kb on + strand, within PS417_09360 at 2030.963 kb on + strand, within PS417_09360 at 2030.963 kb on + strand, within PS417_09360 at 2030.994 kb on + strand, within PS417_09360 at 2031.054 kb on - strand, within PS417_09360 at 2031.122 kb on + strand, within PS417_09360 at 2031.337 kb on + strand, within PS417_09360 at 2031.337 kb on + strand at 2031.526 kb on + strand at 2031.526 kb on + strand at 2031.613 kb on + strand at 2031.656 kb on + strand at 2031.657 kb on - strand at 2031.783 kb on + strand at 2031.792 kb on + strand at 2031.792 kb on + strand at 2031.962 kb on - strand, within PS417_09365 at 2031.987 kb on + strand at 2032.035 kb on + strand, within PS417_09365 at 2032.224 kb on + strand at 2032.224 kb on + strand, within PS417_09365 at 2032.224 kb on + strand, within PS417_09365 at 2032.224 kb on + strand, within PS417_09365 at 2032.225 kb on - strand, within PS417_09365 at 2032.228 kb on + strand, within PS417_09365 at 2032.229 kb on - strand, within PS417_09365 at 2032.435 kb on - strand, within PS417_09365
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,029,386 - -0.5 2,029,636 - PS417_09355 0.30 +1.2 2,029,677 + -0.0 2,030,353 + +0.1 2,030,381 + -1.5 2,030,381 + -0.8 2,030,392 + +0.3 2,030,393 - -1.3 2,030,395 + +0.8 2,030,396 - -0.2 2,030,487 - -2.0 2,030,487 - +0.1 2,030,606 + PS417_09360 0.21 -2.1 2,030,607 - PS417_09360 0.21 +0.3 2,030,708 + PS417_09360 0.30 -0.0 2,030,738 + PS417_09360 0.33 +0.9 2,030,739 - PS417_09360 0.33 -1.7 2,030,911 + PS417_09360 0.49 +1.9 2,030,963 + PS417_09360 0.54 -1.2 2,030,963 + PS417_09360 0.54 -3.0 2,030,994 + PS417_09360 0.57 +0.5 2,031,054 - PS417_09360 0.63 +0.7 2,031,122 + PS417_09360 0.69 +2.5 2,031,337 + PS417_09360 0.89 -2.8 2,031,337 + +2.5 2,031,526 + -0.4 2,031,526 + +0.1 2,031,613 + -0.2 2,031,656 + +0.6 2,031,657 - -0.6 2,031,783 + +0.3 2,031,792 + -1.0 2,031,792 + +0.2 2,031,962 - PS417_09365 0.22 +0.5 2,031,987 + -1.5 2,032,035 + PS417_09365 0.32 +1.2 2,032,224 + -1.5 2,032,224 + PS417_09365 0.59 +1.6 2,032,224 + PS417_09365 0.59 -0.2 2,032,224 + PS417_09365 0.59 -0.0 2,032,225 - PS417_09365 0.59 +1.4 2,032,228 + PS417_09365 0.59 -1.6 2,032,229 - PS417_09365 0.60 +0.9 2,032,435 - PS417_09365 0.88 -0.3
Or see this region's nucleotide sequence