Strain Fitness in Pseudomonas simiae WCS417 around PS417_09360

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09350 and PS417_09355 overlap by 4 nucleotidesPS417_09355 and PS417_09360 are separated by 179 nucleotidesPS417_09360 and PS417_09365 are separated by 347 nucleotides PS417_09350: PS417_09350 - ABC transporter permease, at 2,028,561 to 2,029,397 _09350 PS417_09355: PS417_09355 - hypothetical protein, at 2,029,394 to 2,030,200 _09355 PS417_09360: PS417_09360 - ABC transporter substrate-binding protein, at 2,030,380 to 2,031,456 _09360 PS417_09365: PS417_09365 - MFS transporter, at 2,031,804 to 2,032,517 _09365 Position (kb) 2030 2031 2032Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2029.386 kb on - strandat 2029.636 kb on - strand, within PS417_09355at 2029.677 kb on + strandat 2030.353 kb on + strandat 2030.381 kb on + strandat 2030.381 kb on + strandat 2030.392 kb on + strandat 2030.393 kb on - strandat 2030.395 kb on + strandat 2030.396 kb on - strandat 2030.487 kb on - strandat 2030.487 kb on - strandat 2030.606 kb on + strand, within PS417_09360at 2030.607 kb on - strand, within PS417_09360at 2030.708 kb on + strand, within PS417_09360at 2030.738 kb on + strand, within PS417_09360at 2030.739 kb on - strand, within PS417_09360at 2030.911 kb on + strand, within PS417_09360at 2030.963 kb on + strand, within PS417_09360at 2030.963 kb on + strand, within PS417_09360at 2030.994 kb on + strand, within PS417_09360at 2031.054 kb on - strand, within PS417_09360at 2031.122 kb on + strand, within PS417_09360at 2031.337 kb on + strand, within PS417_09360at 2031.337 kb on + strandat 2031.526 kb on + strandat 2031.526 kb on + strandat 2031.613 kb on + strandat 2031.656 kb on + strandat 2031.657 kb on - strandat 2031.783 kb on + strandat 2031.792 kb on + strandat 2031.792 kb on + strandat 2031.962 kb on - strand, within PS417_09365at 2031.987 kb on + strandat 2032.035 kb on + strand, within PS417_09365at 2032.224 kb on + strandat 2032.224 kb on + strand, within PS417_09365at 2032.224 kb on + strand, within PS417_09365at 2032.224 kb on + strand, within PS417_09365at 2032.225 kb on - strand, within PS417_09365at 2032.228 kb on + strand, within PS417_09365at 2032.229 kb on - strand, within PS417_09365at 2032.435 kb on - strand, within PS417_09365

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,029,386 - -0.5
2,029,636 - PS417_09355 0.30 +1.2
2,029,677 + -0.0
2,030,353 + +0.1
2,030,381 + -1.5
2,030,381 + -0.8
2,030,392 + +0.3
2,030,393 - -1.3
2,030,395 + +0.8
2,030,396 - -0.2
2,030,487 - -2.0
2,030,487 - +0.1
2,030,606 + PS417_09360 0.21 -2.1
2,030,607 - PS417_09360 0.21 +0.3
2,030,708 + PS417_09360 0.30 -0.0
2,030,738 + PS417_09360 0.33 +0.9
2,030,739 - PS417_09360 0.33 -1.7
2,030,911 + PS417_09360 0.49 +1.9
2,030,963 + PS417_09360 0.54 -1.2
2,030,963 + PS417_09360 0.54 -3.0
2,030,994 + PS417_09360 0.57 +0.5
2,031,054 - PS417_09360 0.63 +0.7
2,031,122 + PS417_09360 0.69 +2.5
2,031,337 + PS417_09360 0.89 -2.8
2,031,337 + +2.5
2,031,526 + -0.4
2,031,526 + +0.1
2,031,613 + -0.2
2,031,656 + +0.6
2,031,657 - -0.6
2,031,783 + +0.3
2,031,792 + -1.0
2,031,792 + +0.2
2,031,962 - PS417_09365 0.22 +0.5
2,031,987 + -1.5
2,032,035 + PS417_09365 0.32 +1.2
2,032,224 + -1.5
2,032,224 + PS417_09365 0.59 +1.6
2,032,224 + PS417_09365 0.59 -0.2
2,032,224 + PS417_09365 0.59 -0.0
2,032,225 - PS417_09365 0.59 +1.4
2,032,228 + PS417_09365 0.59 -1.6
2,032,229 - PS417_09365 0.60 +0.9
2,032,435 - PS417_09365 0.88 -0.3

Or see this region's nucleotide sequence