Strain Fitness in Pseudomonas simiae WCS417 around PS417_08185

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08180 and PS417_08185 are separated by 128 nucleotidesPS417_08185 and PS417_08190 are separated by 96 nucleotides PS417_08180: PS417_08180 - glycosyl transferase, at 1,791,010 to 1,792,269 _08180 PS417_08185: PS417_08185 - glycosyl transferase, at 1,792,398 to 1,793,411 _08185 PS417_08190: PS417_08190 - membrane protein, at 1,793,508 to 1,795,502 _08190 Position (kb) 1792 1793 1794Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1791.526 kb on + strand, within PS417_08180at 1791.541 kb on + strand, within PS417_08180at 1791.541 kb on + strandat 1791.551 kb on + strand, within PS417_08180at 1791.551 kb on + strand, within PS417_08180at 1791.552 kb on - strand, within PS417_08180at 1791.586 kb on + strand, within PS417_08180at 1791.587 kb on - strand, within PS417_08180at 1791.587 kb on - strand, within PS417_08180at 1791.591 kb on + strand, within PS417_08180at 1791.591 kb on + strand, within PS417_08180at 1791.591 kb on + strand, within PS417_08180at 1791.592 kb on - strand, within PS417_08180at 1791.592 kb on - strand, within PS417_08180at 1791.592 kb on - strand, within PS417_08180at 1791.592 kb on - strand, within PS417_08180at 1791.592 kb on - strand, within PS417_08180at 1791.592 kb on - strand, within PS417_08180at 1791.592 kb on - strand, within PS417_08180at 1791.622 kb on + strand, within PS417_08180at 1791.705 kb on + strand, within PS417_08180at 1791.705 kb on + strand, within PS417_08180at 1791.705 kb on + strandat 1791.705 kb on + strand, within PS417_08180at 1791.984 kb on + strand, within PS417_08180at 1791.998 kb on - strand, within PS417_08180at 1792.113 kb on + strand, within PS417_08180at 1792.122 kb on + strand, within PS417_08180at 1792.123 kb on - strand, within PS417_08180at 1792.123 kb on - strand, within PS417_08180at 1792.183 kb on + strandat 1792.183 kb on + strandat 1792.184 kb on - strandat 1792.279 kb on + strandat 1792.279 kb on + strandat 1792.280 kb on - strandat 1792.307 kb on - strandat 1792.307 kb on - strandat 1792.356 kb on + strandat 1792.357 kb on - strandat 1792.395 kb on + strandat 1792.396 kb on - strandat 1792.396 kb on - strandat 1792.396 kb on - strandat 1792.445 kb on - strandat 1792.468 kb on - strandat 1792.586 kb on - strand, within PS417_08185at 1792.682 kb on + strand, within PS417_08185at 1792.808 kb on - strand, within PS417_08185at 1792.808 kb on - strandat 1792.822 kb on - strand, within PS417_08185at 1792.822 kb on - strand, within PS417_08185at 1792.848 kb on - strand, within PS417_08185at 1792.921 kb on - strandat 1792.921 kb on - strand, within PS417_08185at 1792.921 kb on - strand, within PS417_08185at 1792.991 kb on - strand, within PS417_08185at 1793.132 kb on - strand, within PS417_08185at 1793.159 kb on - strand, within PS417_08185at 1793.191 kb on - strand, within PS417_08185at 1793.355 kb on - strandat 1793.413 kb on - strandat 1793.413 kb on - strandat 1793.413 kb on - strandat 1793.413 kb on - strandat 1793.483 kb on + strandat 1793.507 kb on + strandat 1793.518 kb on + strandat 1793.518 kb on + strandat 1793.519 kb on - strandat 1793.656 kb on + strandat 1793.724 kb on + strand, within PS417_08190at 1793.742 kb on + strand, within PS417_08190at 1793.743 kb on - strand, within PS417_08190at 1793.817 kb on + strand, within PS417_08190at 1793.817 kb on + strand, within PS417_08190at 1793.817 kb on + strand, within PS417_08190at 1793.823 kb on + strand, within PS417_08190at 1793.823 kb on + strand, within PS417_08190at 1793.823 kb on + strand, within PS417_08190at 1793.861 kb on - strand, within PS417_08190at 1793.868 kb on + strand, within PS417_08190at 1793.869 kb on - strand, within PS417_08190at 1793.869 kb on - strand, within PS417_08190at 1793.869 kb on - strand, within PS417_08190at 1793.878 kb on + strandat 1793.878 kb on + strand, within PS417_08190at 1793.999 kb on + strand, within PS417_08190at 1794.003 kb on + strand, within PS417_08190at 1794.003 kb on + strand, within PS417_08190at 1794.077 kb on + strand, within PS417_08190at 1794.129 kb on + strand, within PS417_08190at 1794.129 kb on + strand, within PS417_08190at 1794.143 kb on + strand, within PS417_08190at 1794.259 kb on + strand, within PS417_08190at 1794.259 kb on + strand, within PS417_08190

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,791,526 + PS417_08180 0.41 -1.7
1,791,541 + PS417_08180 0.42 -1.4
1,791,541 + +0.5
1,791,551 + PS417_08180 0.43 -1.1
1,791,551 + PS417_08180 0.43 -0.5
1,791,552 - PS417_08180 0.43 +0.1
1,791,586 + PS417_08180 0.46 -2.0
1,791,587 - PS417_08180 0.46 -1.1
1,791,587 - PS417_08180 0.46 -2.1
1,791,591 + PS417_08180 0.46 +1.5
1,791,591 + PS417_08180 0.46 -1.9
1,791,591 + PS417_08180 0.46 -1.2
1,791,592 - PS417_08180 0.46 -0.6
1,791,592 - PS417_08180 0.46 -1.4
1,791,592 - PS417_08180 0.46 -1.5
1,791,592 - PS417_08180 0.46 -0.0
1,791,592 - PS417_08180 0.46 -1.7
1,791,592 - PS417_08180 0.46 -0.7
1,791,592 - PS417_08180 0.46 +1.5
1,791,622 + PS417_08180 0.49 +1.8
1,791,705 + PS417_08180 0.55 -2.4
1,791,705 + PS417_08180 0.55 -0.2
1,791,705 + -0.7
1,791,705 + PS417_08180 0.55 -0.8
1,791,984 + PS417_08180 0.77 -1.4
1,791,998 - PS417_08180 0.78 +0.1
1,792,113 + PS417_08180 0.88 -2.1
1,792,122 + PS417_08180 0.88 -2.0
1,792,123 - PS417_08180 0.88 -0.5
1,792,123 - PS417_08180 0.88 -1.2
1,792,183 + -1.4
1,792,183 + -1.3
1,792,184 - +2.1
1,792,279 + +0.7
1,792,279 + +0.6
1,792,280 - -0.5
1,792,307 - -3.9
1,792,307 - +0.2
1,792,356 + +2.1
1,792,357 - -0.9
1,792,395 + -1.5
1,792,396 - -1.7
1,792,396 - -2.3
1,792,396 - -1.6
1,792,445 - -1.9
1,792,468 - -1.4
1,792,586 - PS417_08185 0.19 -2.2
1,792,682 + PS417_08185 0.28 -3.6
1,792,808 - PS417_08185 0.40 -3.1
1,792,808 - +1.1
1,792,822 - PS417_08185 0.42 -1.4
1,792,822 - PS417_08185 0.42 -1.9
1,792,848 - PS417_08185 0.44 -1.3
1,792,921 - +0.5
1,792,921 - PS417_08185 0.52 -2.5
1,792,921 - PS417_08185 0.52 -0.3
1,792,991 - PS417_08185 0.58 -2.9
1,793,132 - PS417_08185 0.72 -0.2
1,793,159 - PS417_08185 0.75 -2.6
1,793,191 - PS417_08185 0.78 -1.4
1,793,355 - -0.2
1,793,413 - +0.9
1,793,413 - -2.7
1,793,413 - +0.9
1,793,413 - -2.2
1,793,483 + +1.1
1,793,507 + +1.6
1,793,518 + -1.6
1,793,518 + -0.9
1,793,519 - -0.6
1,793,656 + -1.3
1,793,724 + PS417_08190 0.11 -1.0
1,793,742 + PS417_08190 0.12 -0.2
1,793,743 - PS417_08190 0.12 +0.5
1,793,817 + PS417_08190 0.15 -2.2
1,793,817 + PS417_08190 0.15 -0.3
1,793,817 + PS417_08190 0.15 +0.5
1,793,823 + PS417_08190 0.16 -0.5
1,793,823 + PS417_08190 0.16 +0.0
1,793,823 + PS417_08190 0.16 -1.4
1,793,861 - PS417_08190 0.18 -0.3
1,793,868 + PS417_08190 0.18 +0.0
1,793,869 - PS417_08190 0.18 -0.9
1,793,869 - PS417_08190 0.18 +0.9
1,793,869 - PS417_08190 0.18 -1.1
1,793,878 + -0.4
1,793,878 + PS417_08190 0.19 -1.4
1,793,999 + PS417_08190 0.25 -0.2
1,794,003 + PS417_08190 0.25 -1.1
1,794,003 + PS417_08190 0.25 -3.3
1,794,077 + PS417_08190 0.29 -0.4
1,794,129 + PS417_08190 0.31 -1.0
1,794,129 + PS417_08190 0.31 -2.2
1,794,143 + PS417_08190 0.32 -0.4
1,794,259 + PS417_08190 0.38 -0.5
1,794,259 + PS417_08190 0.38 -0.7

Or see this region's nucleotide sequence